Package fr.ens.biologie.genomique.aozan.fastqc
This package contains a QCModule for FastQC that list the bad tiles in a
fastq file and class used for modify fastqc bytecode, it is necessary with
FastQC version 0.10.1.
- Since:
- 0.8
-
Class Summary Class Description AbstractQCModuleAozan This class replace normal class AbstracQCModule formBlastContaminantHit This class define a Blast contiminant Hit.ContaminantFinder Source FastQC version 0.10.0, not modify.OverrepresentedSequencesBlast This class launches blastn on one sequence query and parses xml result file to identify the best hit.RuntimePatchFastQC This class redefine methods or constructors from FastQC to provide access to files in fastqc jar.