createListFastqSamples2
public static Set<FastqSample> createListFastqSamples2(QC qc,
RunData data,
boolean processStandardSamples,
boolean processUndeterminedSamples,
boolean processOnlyFirstRead)
throws IOException
Create a set of FastqSample to process.
- Parameters:
qc
- the QC object
data
- the RunData object
processStandardSamples
- true if standard samples must be processed
processUndeterminedSamples
- true if undetermined samples must be
processed
processOnlyFirstRead
- true if only the first read must be processed
- Returns:
- a set of of FastqSample to process
- Throws:
IOException
- if an error occurs while creating a FastqSample