class |
AbstractFastQCSampleTest |
This class define an abstract FastQC test.
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class |
AbstractSampleTest |
This class define a abstract sample test.
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class |
AbstractSimpleSampleTest |
This class define a simple sample test.
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class |
BasePFMeanQualityScoreSampleTest |
This class define a percent quality mean score sample test.
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class |
ClusterRecoveryReportSampleTest |
The class adds in the qc report html a link to the report recoverable cluster
results for each sample.
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class |
FastQCAdapterContentSampleTest |
This class define a sample test for FastQC per tile sequence quality module.
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class |
FastQCBasicStatsSampleTest |
This class define a sample test for FastQC basic stats module.
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class |
FastQCDuplicationLevelSampleTest |
This class define a sample test for FastQC duplication level module.
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class |
FastQCKmerContentSampleTest |
This class define a sample test for FastQC kmer content module.
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class |
FastQCNContentSampleTest |
This class define a sample test for FastQC N content module.
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class |
FastQCOverrepresentedSequencesSampleTest |
This class define a sample test for FastQC over represented seqs module.
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class |
FastQCPerBaseQualityScoresSampleTest |
This class define a sample test for FastQC per base quality score module.
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class |
FastQCPerBaseSequenceContentSampleTest |
This class define a sample test for FastQC per base sequence content module.
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class |
FastQCPerSequenceGCContentSampleTest |
This class define a sample test for FastQC basic stats module.
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class |
FastQCPerSequenceQualityScoresSampleTest |
This class define a sample test for FastQC per sequence quality scores
module.
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class |
FastQCPerTileSequenceQualitySampleTest |
This class define a sample test for FastQC per tile sequence quality module.
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class |
FastQCSequenceLengthDistributionSampleTest |
This class define a sample test for FastQC sequence length distribution
module.
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class |
FastQScreenMappedExceptRefGenomeSampleTest |
The class adds in the qc report html one result from fastqScreen for each
sample.
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class |
FastQScreenMappedPercentSampleTest |
The class add in the qc report html values from FastqScreen for each sample
and for each reference genomes.
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class |
FastQScreenReportSampleTest |
The class adds in the qc report html a link to the report fastqScreen for
each sample.
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class |
GenomeNamesSampleTest |
This class define a test to get the genome(s) reference(s) of a sample.
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class |
InLanePercentSampleTest |
This class define a sample percent in lane test.
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class |
PFClusterCountSampleTest |
This class define a passing filter clusters count test for samples.
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class |
PFPercentSampleTest |
This class define a percent passing filter sample test.
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class |
Q30PercentSampleTest |
This class define a percent Q30 sample test.
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class |
RawClusterCountSampleTest |
This class define a raw clusters count test for samples.
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class |
RecoverablePFClusterCountSampleTest |
This class define a recoverable passing filter clusters count test for
samples.
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class |
RecoverablePFClusterPercentSampleTest |
This class define a recoverable passing filter clusters percent test for
samples.
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class |
RecoverableRawClusterCountSampleTest |
This class define a recoverable passing filter clusters count test for
samples.
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class |
RecoverableRawClusterPercentSampleTest |
This class define a recoverable passing filter clusters percent test for
samples.
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