Package fr.ens.biologie.genomique.eoulsan.modules.mapping.local

Class ReadsFilterLocalModule

java.lang.Object

fr.ens.biologie.genomique.eoulsan.modules.AbstractModule

fr.ens.biologie.genomique.eoulsan.modules.mapping.AbstractReadsFilterModule

fr.ens.biologie.genomique.eoulsan.modules.mapping.local.ReadsFilterLocalModule

All Implemented Interfaces:

Module

public class ReadsFilterLocalModule
extends AbstractReadsFilterModule

This class define a module for reads filtering.

Since:

1.0

Author:

Laurent Jourdren, Maria Bernard

Field Summary

Fields inherited from class fr.ens.biologie.genomique.eoulsan.modules.mapping.AbstractReadsFilterModule

COUNTER_GROUP, MODULE_NAME

Constructor Summary

Constructors

Constructor	Description
ReadsFilterLocalModule()

Method Summary

Modifier and Type	Method	Description
TaskResult	execute(TaskContext context, TaskStatus status)	Execute a task step.

Methods inherited from class fr.ens.biologie.genomique.eoulsan.modules.mapping.AbstractReadsFilterModule

configure, getDescription, getInputPorts, getName, getOutputPorts, getReadFilter, getReadFilterParameters, getReducerTaskCount, getVersion

Methods inherited from class fr.ens.biologie.genomique.eoulsan.modules.AbstractModule

getChecker, getParallelizationMode, getRequiredEoulsanVersion, getRequirements

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReadsFilterLocalModule

public ReadsFilterLocalModule()

Method Detail

execute

public TaskResult execute(TaskContext context,
                          TaskStatus status)

Description copied from interface: Module

Execute a task step.

Parameters:

context - Execution context

status - of the task