Quality report on run 160617_NB500892_0097_AH7N2TAFXX
Generated Thu 22 Sep 2016
Global / Lanes / Projects / Samples

- Sequencer Name: NextSeq NB500892
- Sequencer Family: NextSeq
- Instrument S/N: NB500892
- Run Id: 160617_NB500892_0097_AH7N2TAFXX
- Flow cell: H7N2TAFXX
- Run started: Fri 17 Jun 2016
- Instrument run number: 97
- Sequencer Application name: NextSeq Control Software
- Sequencer Application version: 2.0.2.1
- Sequencer RTA version: 2.4.11
- Generated by: Aozan version 2.0-rc19-SNAPSHOT (revision heads/master-0-ge631b27)
- Creation date: Thu 22 Sep 2016

## Global report

Raw Cluster Est. | Mean Raw Cluster Est. | Median Raw Cluster Est. | Raw Cluster SD Est. | Cluster Density (k/mm2) | PF Cluster Est. (%) | PF Cluster Est. | Mean PF Cluster Est. | Median PF Cluster Est. | PF Cluster SD Est. | PhiX Aligned Est. (%) | PhiX Raw Cluster Est. | Mean PhiX Raw Cluster Est. | Median PhiX Raw Cluster Est. | PhiX Raw Cluster SD Est. | Q30 (%) | Error Rate (%) | Undetermined Cluster Est. (%) | Base Count (Gb) | Non-Indexed Base Count (Gb) | Cycle Count | Lane Count | Sample Count | Project Count
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
50 636 664 | 12 659 112 | 12 656 376 | 66 528 | 61.05 | 96.97% | 49 103 352 | 12 275 784 | 12 284 280 | 62 496 | 4.67% | 2 366 424 | 591 552 | 597 024 | 13 680 | 96.94% | 0.16% | 10.89% | 7.90 | 7.60 | 156 | 4 | 24 | 1

## Lanes Quality report

### Read 1 (75 cycles)

Lane | Raw Cluster Est. | PF Cluster Est. | PF Cluster Est. (%) | Cluster Density (k/mm2) | PhiX Aligned (%) | PhiX Raw Cluster Est. | Q30 (%) | Error Rate (%) | Error Rate 35 Cycle (%) | Error Rate 75 Cycle (%) | Error Rate 100 Cycle (%) | First Cycle Intensity | Cycle 20 Intensity (%) | Phasing / Prephasing
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
1 | 12 582 216 | 12 192 696 | 96.90% | 60.68 | 4.52% | 568 491 | 97.64% | 0.15% | 0.10% | 0.15% | 0.00% | 6 020 | 89.18% | 0.083% / 0.197%
2 | 12 606 552 | 12 238 416 | 97.08% | 60.80 | 4.79% | 603 907 | 97.68% | 0.15% | 0.10% | 0.15% | 0.00% | 6 685 | 87.39% | 0.080% / 0.190%
3 | 12 706 272 | 12 342 096 | 97.13% | 61.28 | 4.69% | 595 516 | 97.77% | 0.15% | 0.10% | 0.15% | 0.00% | 6 366 | 88.59% | 0.081% / 0.193%
4 | 12 741 624 | 12 330 144 | 96.77% | 61.45 | 4.70% | 598 614 | 97.09% | 0.18% | 0.11% | 0.18% | 0.00% | 5 267 | 88.50% | 0.089% / 0.187%

### Read 2 (6 cycles, index)

Lane | Raw Cluster Est. | PF Cluster Est. | PF Cluster Est. (%) | Cluster Density (k/mm2) | PhiX Aligned (%) | PhiX Raw Cluster Est. | Q30 (%) | Error Rate (%) | Error Rate 35 Cycle (%) | Error Rate 75 Cycle (%) | Error Rate 100 Cycle (%) | First Cycle Intensity | Cycle 20 Intensity (%) | Phasing / Prephasing
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
1 | 12 582 216 | 12 192 696 | 96.90% | 60.68 | 0.00% | 0 | 97.57% | 0.00% | 0.00% | 0.00% | 0.00% | 3 912 | 0.00% | 0.000% / 0.000%
2 | 12 606 552 | 12 238 416 | 97.08% | 60.80 | 0.00% | 0 | 96.67% | 0.00% | 0.00% | 0.00% | 0.00% | 4 399 | 0.00% | 0.000% / 0.000%
3 | 12 706 272 | 12 342 096 | 97.13% | 61.28 | 0.00% | 0 | 97.73% | 0.00% | 0.00% | 0.00% | 0.00% | 4 000 | 0.00% | 0.000% / 0.000%
4 | 12 741 624 | 12 330 144 | 96.77% | 61.45 | 0.00% | 0 | 96.47% | 0.00% | 0.00% | 0.00% | 0.00% | 3 478 | 0.00% | 0.000% / 0.000%

### Read 3 (75 cycles)

Lane | Raw Cluster Est. | PF Cluster Est. | PF Cluster Est. (%) | Cluster Density (k/mm2) | PhiX Aligned (%) | PhiX Raw Cluster Est. | Q30 (%) | Error Rate (%) | Error Rate 35 Cycle (%) | Error Rate 75 Cycle (%) | Error Rate 100 Cycle (%) | First Cycle Intensity | Cycle 20 Intensity (%) | Phasing / Prephasing
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
1 | 12 582 216 | 12 192 696 | 96.90% | 60.68 | 4.46% | 561 341 | 96.62% | 0.25% | 0.14% | 0.25% | 0.00% | 6 896 | 87.74% | 0.139% / 0.187%
2 | 12 606 552 | 12 238 416 | 97.08% | 60.80 | 4.72% | 595 633 | 96.23% | 0.23% | 0.13% | 0.23% | 0.00% | 7 488 | 87.16% | 0.142% / 0.186%
3 | 12 706 272 | 12 342 096 | 97.13% | 61.28 | 4.63% | 588 556 | 96.68% | 0.23% | 0.13% | 0.23% | 0.00% | 6 397 | 92.05% | 0.127% / 0.192%
4 | 12 741 624 | 12 330 144 | 96.77% | 61.45 | 4.63% | 589 599 | 95.72% | 0.28% | 0.15% | 0.28% | 0.00% | 5 915 | 89.93% | 0.147% / 0.201%

#### Filter samples data tables

ALL | cond1rep1 | cond1rep2 | cond1rep3 | cond2rep1 | cond2rep2 | cond2rep3 | undetermined

## Projects statistics report

Project | Raw Cluster | Min. Raw Cluster | Max. Raw Cluster | Recoverable Raw Cluster (%) | PF Cluster | Min. PF Cluster | Max. PF Cluster | Recoverable PF Cluster (%) | Indexed | FastQ Screen Sample Overcontamination | FastQ Screen Report | Sample Count | Genome(s) | Lane(s)
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
aozan_demo | 45 124 016 | 1 716 021 | 2 031 272 | 1.66% | 45 124 016 | 1 716 021 | 2 031 272 | 1.66% | true | 0 | link | 24 | Mus Musculus | 1,2,3,4

## Pooled Samples Quality report (first read only)

Sample name | Description | Index | Project | Sample Count | Raw Cluster | Min. Raw Cluster | Max. Raw Cluster | Raw Cluster Recovery | Recoverable Raw Cluster (%) | Passing Filter (%) | PF Cluster | Min. PF Cluster | Max. PF Cluster | PF Cluster Recovery | Recoverable PF Cluster (%) | Q30 (%) | Sample in Run (%) | Sample in Project (%) | Number of Sample in Pool | Genome(s) | FastQ Screen Sample Overcontamination | FastqScreen Report | FastQ Screen mapped on adapters (%) | FastQ Screen mapped on lsuref (%) | FastQ Screen mapped on ssuref (%) | FastQ Screen mapped on phix (%) | FastQ Screen mapped except. Ref. Genome (%)
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
cond1rep1 | Condition 1 | ATCACG | aozan_demo | 4 | 7 148 177 | 1 776 607 | 1 805 703 | 122 661 | 1.72% | 100.00% | 7 148 177 | 1 776 607 | 1 805 703 | 122 661 | 1.72% | 97.53% | 14.12% | 15.84% | 4 | Mus Musculus | 0 | link | 0.00% | 0.62% | 0.34% | 0.00% | NA
cond1rep2 | Condition 1 | CGATGT | aozan_demo | 4 | 8 048 697 | 1 996 979 | 2 031 272 | 109 000 | 1.35% | 100.00% | 8 048 697 | 1 996 979 | 2 031 272 | 109 000 | 1.35% | 97.33% | 15.89% | 17.84% | 4 | Mus Musculus | 0 | link | 0.00% | 0.46% | 0.51% | 0.00% | NA
cond1rep3 | Condition 1 | TTAGGC | aozan_demo | 4 | 6 909 297 | 1 716 021 | 1 745 479 | 95 660 | 1.38% | 100.00% | 6 909 297 | 1 716 021 | 1 745 479 | 95 660 | 1.38% | 97.24% | 13.64% | 15.31% | 4 | Mus Musculus | 0 | link | 0.00% | 0.75% | 1.00% | 0.00% | NA
cond2rep1 | Condition 2 | TGACCA | aozan_demo | 4 | 7 857 958 | 1 950 508 | 1 982 511 | 146 981 | 1.87% | 100.00% | 7 857 958 | 1 950 508 | 1 982 511 | 146 981 | 1.87% | 97.51% | 15.52% | 17.41% | 4 | Mus Musculus | 0 | link | 0.00% | 2.69% | 1.99% | 0.00% | NA
cond2rep2 | Condition 2 | ACAGTG | aozan_demo | 4 | 7 381 443 | 1 829 940 | 1 862 912 | 157 889 | 2.14% | 100.00% | 7 381 443 | 1 829 940 | 1 862 912 | 157 889 | 2.14% | 97.43% | 14.58% | 16.36% | 4 | Mus Musculus | 0 | link | 0.00% | 1.00% | 0.54% | 0.00% | NA
cond2rep3 | Condition 2 | GCCAAT | aozan_demo | 4 | 7 778 444 | 1 929 172 | 1 961 387 | 115 326 | 1.48% | 100.00% | 7 778 444 | 1 929 172 | 1 961 387 | 115 326 | 1.48% | 97.37% | 15.36% | 17.24% | 4 | Mus Musculus | 0 | link | 0.00% | 1.89% | 2.30% | 0.00% | NA
undetermined |  |  |  | 4 | 5 512 789 | 1 317 055 | 1 456 219 | 747 517 | 13.56% | 72.19% | 3 979 508 | 942 650 | 1 044 788 | 747 517 | 18.78% | 91.46% | 10.89% | NA | 4 |  | NA | link | 0.00% | 2.32% | 2.34% | 41.51% | NA

## Samples Quality report

### Read 1

Lane | Sample name | Description | Index | Project | Raw Cluster | Passing Filter (%) | PF Cluster | Base PF Mean Quality Score | Q30 (%) | Sample in Lane (%) | Recoverable Raw Cluster | Recoverable PF Cluster | Cluster Recovery Report | Basic Statistics | Per Base Quality Scores | Per Tile Sequence Quality | Per Sequence Quality Scores | Per Base Sequence Content | Per Sequence GC Content | N Content | Sequence Length Distribution | Duplication Level | Overrepresented Sequences | Adapter Content | Kmer Content | Bad Tiles | FastQ Screen mapped on adapters (%) | FastQ Screen mapped on lsuref (%) | FastQ Screen mapped on ssuref (%) | FastQ Screen mapped on phix (%) | FastQ Screen mapped except. Ref. Genome (%) | FastQ Screen Report | Sample name
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
1 | cond1rep1 | Condition 1 | ATCACG | aozan_demo | 1 777 370 | 100.00% | 1 777 370 | 35.28 | 98.03% | 14.13% | 27 706 | 27 706 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.63% | 0.34% | 0.00% | 0.95% | link | cond1rep1 aozan_demo
1 | cond1rep2 | Condition 1 | CGATGT | aozan_demo | 2 007 025 | 100.00% | 2 007 025 | 35.27 | 98.00% | 15.95% | 25 686 | 25 686 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.46% | 0.51% | 0.00% | 0.96% | link | cond1rep2 aozan_demo
1 | cond1rep3 | Condition 1 | TTAGGC | aozan_demo | 1 722 801 | 100.00% | 1 722 801 | 35.24 | 97.87% | 13.69% | 22 493 | 22 493 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.74% | 1.01% | 0.00% | 1.73% | link | cond1rep3 aozan_demo
1 | cond2rep1 | Condition 2 | TGACCA | aozan_demo | 1 960 334 | 100.00% | 1 960 334 | 35.28 | 98.05% | 15.58% | 33 576 | 33 576 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.69% | 1.98% | 0.00% | 4.61% | link | cond2rep1 aozan_demo
1 | cond2rep2 | Condition 2 | ACAGTG | aozan_demo | 1 841 075 | 100.00% | 1 841 075 | 35.29 | 98.06% | 14.63% | 38 265 | 38 265 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.01% | 0.54% | 0.00% | 1.53% | link | cond2rep2 aozan_demo
1 | cond2rep3 | Condition 2 | GCCAAT | aozan_demo | 1 941 505 | 100.00% | 1 941 505 | 35.27 | 97.96% | 15.43% | 27 216 | 27 216 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.89% | 2.30% | 0.00% | 4.12% | link | cond2rep3 aozan_demo
1 | undetermined | No description | undetermined | undetermined | 1 332 138 | 70.76% | 942 650 | 34.28 | 93.31% | 10.59% | 174 942 | 174 942 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.29% | 2.32% | 41.19% | 43.92% | link | undetermined undetermined
2 | cond1rep1 | Condition 1 | ATCACG | aozan_demo | 1 776 607 | 100.00% | 1 776 607 | 35.28 | 98.04% | 14.09% | 31 910 | 31 910 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.63% | 0.34% | 0.00% | 0.96% | link | cond1rep1 aozan_demo
2 | cond1rep2 | Condition 1 | CGATGT | aozan_demo | 1 996 979 | 100.00% | 1 996 979 | 35.27 | 98.00% | 15.84% | 27 627 | 27 627 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.46% | 0.51% | 0.00% | 0.95% | link | cond1rep2 aozan_demo
2 | cond1rep3 | Condition 1 | TTAGGC | aozan_demo | 1 716 021 | 100.00% | 1 716 021 | 35.25 | 97.91% | 13.61% | 23 606 | 23 606 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.76% | 0.98% | 0.00% | 1.72% | link | cond1rep3 aozan_demo
2 | cond2rep1 | Condition 2 | TGACCA | aozan_demo | 1 950 508 | 100.00% | 1 950 508 | 35.28 | 98.04% | 15.47% | 38 868 | 38 868 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.70% | 1.98% | 0.00% | 4.63% | link | cond2rep1 aozan_demo
2 | cond2rep2 | Condition 2 | ACAGTG | aozan_demo | 1 829 940 | 100.00% | 1 829 940 | 35.28 | 98.05% | 14.52% | 39 885 | 39 885 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.00% | 0.54% | 0.00% | 1.53% | link | cond2rep2 aozan_demo
2 | cond2rep3 | Condition 2 | GCCAAT | aozan_demo | 1 929 172 | 100.00% | 1 929 172 | 35.26 | 97.94% | 15.30% | 29 291 | 29 291 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.89% | 2.30% | 0.00% | 4.13% | link | cond2rep3 aozan_demo
2 | undetermined | No description | undetermined | undetermined | 1 407 377 | 73.84% | 1 039 226 | 34.43 | 94.11% | 11.16% | 191 187 | 191 187 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.67% | 2.67% | 41.46% | 44.57% | link | undetermined undetermined
3 | cond1rep1 | Condition 1 | ATCACG | aozan_demo | 1 805 703 | 100.00% | 1 805 703 | 35.29 | 98.09% | 14.21% | 28 413 | 28 413 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.62% | 0.34% | 0.00% | 0.95% | link | cond1rep1 aozan_demo
3 | cond1rep2 | Condition 1 | CGATGT | aozan_demo | 2 031 272 | 100.00% | 2 031 272 | 35.28 | 98.06% | 15.99% | 25 666 | 25 666 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.45% | 0.50% | 0.00% | 0.94% | link | cond1rep2 aozan_demo
3 | cond1rep3 | Condition 1 | TTAGGC | aozan_demo | 1 745 479 | 100.00% | 1 745 479 | 35.25 | 97.90% | 13.74% | 23 169 | 23 169 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.74% | 1.00% | 0.00% | 1.72% | link | cond1rep3 aozan_demo
3 | cond2rep1 | Condition 2 | TGACCA | aozan_demo | 1 982 511 | 100.00% | 1 982 511 | 35.30 | 98.11% | 15.60% | 33 469 | 33 469 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.67% | 2.01% | 0.00% | 4.62% | link | cond2rep1 aozan_demo
3 | cond2rep2 | Condition 2 | ACAGTG | aozan_demo | 1 862 912 | 100.00% | 1 862 912 | 35.30 | 98.13% | 14.66% | 38 533 | 38 533 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.01% | 0.53% | 0.00% | 1.52% | link | cond2rep2 aozan_demo
3 | cond2rep3 | Condition 2 | GCCAAT | aozan_demo | 1 961 387 | 100.00% | 1 961 387 | 35.27 | 98.01% | 15.44% | 27 430 | 27 430 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.88% | 2.29% | 0.00% | 4.11% | link | cond2rep3 aozan_demo
3 | undetermined | No description | undetermined | undetermined | 1 317 055 | 72.35% | 952 844 | 34.49 | 94.33% | 10.37% | 176 680 | 176 680 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.08% | 2.10% | 43.73% | 46.24% | link | undetermined undetermined
4 | cond1rep1 | Condition 1 | ATCACG | aozan_demo | 1 788 497 | 100.00% | 1 788 497 | 35.17 | 97.55% | 14.04% | 34 632 | 34 632 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.62% | 0.34% | 0.00% | 0.95% | link | cond1rep1 aozan_demo
4 | cond1rep2 | Condition 1 | CGATGT | aozan_demo | 2 013 421 | 100.00% | 2 013 421 | 35.16 | 97.48% | 15.80% | 30 021 | 30 021 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.46% | 0.51% | 0.00% | 0.95% | link | cond1rep2 aozan_demo
4 | cond1rep3 | Condition 1 | TTAGGC | aozan_demo | 1 724 996 | 100.00% | 1 724 996 | 35.11 | 97.28% | 13.54% | 26 392 | 26 392 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.75% | 1.00% | 0.00% | 1.73% | link | cond1rep3 aozan_demo
4 | cond2rep1 | Condition 2 | TGACCA | aozan_demo | 1 964 605 | 100.00% | 1 964 605 | 35.17 | 97.56% | 15.42% | 41 068 | 41 068 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.69% | 1.99% | 0.00% | 4.63% | link | cond2rep1 aozan_demo
4 | cond2rep2 | Condition 2 | ACAGTG | aozan_demo | 1 847 516 | 100.00% | 1 847 516 | 35.18 | 97.58% | 14.50% | 41 206 | 41 206 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.00% | 0.54% | 0.00% | 1.53% | link | cond2rep2 aozan_demo
4 | cond2rep3 | Condition 2 | GCCAAT | aozan_demo | 1 946 380 | 100.00% | 1 946 380 | 35.15 | 97.45% | 15.28% | 31 389 | 31 389 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.89% | 2.33% | 0.00% | 4.15% | link | cond2rep3 aozan_demo
4 | undetermined | No description | undetermined | undetermined | 1 456 219 | 71.75% | 1 044 788 | 34.16 | 92.76% | 11.43% | 204 708 | 204 708 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.24% | 2.28% | 39.64% | 42.35% | link | undetermined undetermined
Lane | Sample name | Description | Index | Project | Raw Cluster | Passing Filter (%) | PF Cluster | Base PF Mean Quality Score | Q30 (%) | Sample in Lane (%) | Recoverable Raw Cluster | Recoverable PF Cluster | Cluster Recovery Report | Basic Statistics | Per Base Quality Scores | Per Tile Sequence Quality | Per Sequence Quality Scores | Per Base Sequence Content | Per Sequence GC Content | N Content | Sequence Length Distribution | Duplication Level | Overrepresented Sequences | Adapter Content | Kmer Content | Bad Tiles | FastQ Screen mapped on adapters (%) | FastQ Screen mapped on lsuref (%) | FastQ Screen mapped on ssuref (%) | FastQ Screen mapped on phix (%) | FastQ Screen mapped except. Ref. Genome (%) | FastQ Screen Report | Sample_Project name

### Read 2

Lane | Sample name | Description | Index | Project | Raw Cluster | Passing Filter (%) | PF Cluster | Base PF Mean Quality Score | Q30 (%) | Sample in Lane (%) | Recoverable Raw Cluster | Recoverable PF Cluster | Cluster Recovery Report | Basic Statistics | Per Base Quality Scores | Per Tile Sequence Quality | Per Sequence Quality Scores | Per Base Sequence Content | Per Sequence GC Content | N Content | Sequence Length Distribution | Duplication Level | Overrepresented Sequences | Adapter Content | Kmer Content | Bad Tiles | FastQ Screen mapped on adapters (%) | FastQ Screen mapped on lsuref (%) | FastQ Screen mapped on ssuref (%) | FastQ Screen mapped on phix (%) | FastQ Screen mapped except. Ref. Genome (%) | FastQ Screen Report | Sample name
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---
1 | cond1rep1 | Condition 1 | ATCACG | aozan_demo | 1 777 370 | 100.00% | 1 777 370 | 35.15 | 97.37% | 14.13% | 27 706 | 27 706 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.63% | 0.34% | 0.00% | 0.95% | link | cond1rep1 aozan_demo
1 | cond1rep2 | Condition 1 | CGATGT | aozan_demo | 2 007 025 | 100.00% | 2 007 025 | 35.09 | 97.11% | 15.95% | 25 686 | 25 686 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.46% | 0.51% | 0.00% | 0.96% | link | cond1rep2 aozan_demo
1 | cond1rep3 | Condition 1 | TTAGGC | aozan_demo | 1 722 801 | 100.00% | 1 722 801 | 35.08 | 97.07% | 13.69% | 22 493 | 22 493 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.74% | 1.01% | 0.00% | 1.73% | link | cond1rep3 aozan_demo
1 | cond2rep1 | Condition 2 | TGACCA | aozan_demo | 1 960 334 | 100.00% | 1 960 334 | 35.15 | 97.38% | 15.58% | 33 576 | 33 576 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.69% | 1.98% | 0.00% | 4.61% | link | cond2rep1 aozan_demo
1 | cond2rep2 | Condition 2 | ACAGTG | aozan_demo | 1 841 075 | 100.00% | 1 841 075 | 35.11 | 97.21% | 14.63% | 38 265 | 38 265 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.01% | 0.54% | 0.00% | 1.53% | link | cond2rep2 aozan_demo
1 | cond2rep3 | Condition 2 | GCCAAT | aozan_demo | 1 941 505 | 100.00% | 1 941 505 | 35.10 | 97.17% | 15.43% | 27 216 | 27 216 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.89% | 2.30% | 0.00% | 4.12% | link | cond2rep3 aozan_demo
1 | undetermined | No description | undetermined | undetermined | 1 332 138 | 70.76% | 942 650 | 33.45 | 89.43% | 10.59% | 174 942 | 174 942 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.29% | 2.32% | 41.19% | 43.92% | link | undetermined undetermined
2 | cond1rep1 | Condition 1 | ATCACG | aozan_demo | 1 776 607 | 100.00% | 1 776 607 | 35.10 | 97.14% | 14.09% | 31 910 | 31 910 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.63% | 0.34% | 0.00% | 0.96% | link | cond1rep1 aozan_demo
2 | cond1rep2 | Condition 1 | CGATGT | aozan_demo | 1 996 979 | 100.00% | 1 996 979 | 35.01 | 96.68% | 15.84% | 27 627 | 27 627 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.46% | 0.51% | 0.00% | 0.95% | link | cond1rep2 aozan_demo
2 | cond1rep3 | Condition 1 | TTAGGC | aozan_demo | 1 716 021 | 100.00% | 1 716 021 | 35.02 | 96.75% | 13.61% | 23 606 | 23 606 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.76% | 0.98% | 0.00% | 1.72% | link | cond1rep3 aozan_demo
2 | cond2rep1 | Condition 2 | TGACCA | aozan_demo | 1 950 508 | 100.00% | 1 950 508 | 35.07 | 96.99% | 15.47% | 38 868 | 38 868 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.70% | 1.98% | 0.00% | 4.63% | link | cond2rep1 aozan_demo
2 | cond2rep2 | Condition 2 | ACAGTG | aozan_demo | 1 829 940 | 100.00% | 1 829 940 | 35.03 | 96.81% | 14.52% | 39 885 | 39 885 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.00% | 0.54% | 0.00% | 1.53% | link | cond2rep2 aozan_demo
2 | cond2rep3 | Condition 2 | GCCAAT | aozan_demo | 1 929 172 | 100.00% | 1 929 172 | 35.05 | 96.86% | 15.30% | 29 291 | 29 291 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.89% | 2.30% | 0.00% | 4.13% | link | cond2rep3 aozan_demo
2 | undetermined | No description | undetermined | undetermined | 1 407 377 | 73.84% | 1 039 226 | 33.44 | 89.34% | 11.16% | 191 187 | 191 187 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.67% | 2.67% | 41.46% | 44.57% | link | undetermined undetermined
3 | cond1rep1 | Condition 1 | ATCACG | aozan_demo | 1 805 703 | 100.00% | 1 805 703 | 35.14 | 97.35% | 14.21% | 28 413 | 28 413 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.62% | 0.34% | 0.00% | 0.95% | link | cond1rep1 aozan_demo
3 | cond1rep2 | Condition 1 | CGATGT | aozan_demo | 2 031 272 | 100.00% | 2 031 272 | 35.08 | 97.06% | 15.99% | 25 666 | 25 666 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.45% | 0.50% | 0.00% | 0.94% | link | cond1rep2 aozan_demo
3 | cond1rep3 | Condition 1 | TTAGGC | aozan_demo | 1 745 479 | 100.00% | 1 745 479 | 35.04 | 96.92% | 13.74% | 23 169 | 23 169 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.74% | 1.00% | 0.00% | 1.72% | link | cond1rep3 aozan_demo
3 | cond2rep1 | Condition 2 | TGACCA | aozan_demo | 1 982 511 | 100.00% | 1 982 511 | 35.13 | 97.33% | 15.60% | 33 469 | 33 469 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.67% | 2.01% | 0.00% | 4.62% | link | cond2rep1 aozan_demo
3 | cond2rep2 | Condition 2 | ACAGTG | aozan_demo | 1 862 912 | 100.00% | 1 862 912 | 35.10 | 97.18% | 14.66% | 38 533 | 38 533 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.01% | 0.53% | 0.00% | 1.52% | link | cond2rep2 aozan_demo
3 | cond2rep3 | Condition 2 | GCCAAT | aozan_demo | 1 961 387 | 100.00% | 1 961 387 | 35.08 | 97.10% | 15.44% | 27 430 | 27 430 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.88% | 2.29% | 0.00% | 4.11% | link | cond2rep3 aozan_demo
3 | undetermined | No description | undetermined | undetermined | 1 317 055 | 72.35% | 952 844 | 33.74 | 90.82% | 10.37% | 176 680 | 176 680 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.08% | 2.10% | 43.73% | 46.24% | link | undetermined undetermined
4 | cond1rep1 | Condition 1 | ATCACG | aozan_demo | 1 788 497 | 100.00% | 1 788 497 | 35.01 | 96.70% | 14.04% | 34 632 | 34 632 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.62% | 0.34% | 0.00% | 0.95% | link | cond1rep1 aozan_demo
4 | cond1rep2 | Condition 1 | CGATGT | aozan_demo | 2 013 421 | 100.00% | 2 013 421 | 34.91 | 96.24% | 15.80% | 30 021 | 30 021 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.46% | 0.51% | 0.00% | 0.95% | link | cond1rep2 aozan_demo
4 | cond1rep3 | Condition 1 | TTAGGC | aozan_demo | 1 724 996 | 100.00% | 1 724 996 | 34.90 | 96.22% | 13.54% | 26 392 | 26 392 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 0.75% | 1.00% | 0.00% | 1.73% | link | cond1rep3 aozan_demo
4 | cond2rep1 | Condition 2 | TGACCA | aozan_demo | 1 964 605 | 100.00% | 1 964 605 | 34.99 | 96.61% | 15.42% | 41 068 | 41 068 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.69% | 1.99% | 0.00% | 4.63% | link | cond2rep1 aozan_demo
4 | cond2rep2 | Condition 2 | ACAGTG | aozan_demo | 1 847 516 | 100.00% | 1 847 516 | 34.95 | 96.42% | 14.50% | 41 206 | 41 206 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.00% | 0.54% | 0.00% | 1.53% | link | cond2rep2 aozan_demo
4 | cond2rep3 | Condition 2 | GCCAAT | aozan_demo | 1 946 380 | 100.00% | 1 946 380 | 34.95 | 96.45% | 15.28% | 31 389 | 31 389 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 1.89% | 2.33% | 0.00% | 4.15% | link | cond2rep3 aozan_demo
4 | undetermined | No description | undetermined | undetermined | 1 456 219 | 71.75% | 1 044 788 | 33.10 | 87.78% | 11.43% | 204 708 | 204 708 | link | link | link | link | link | link | link | link | link | link | link | link | link | link | 0.00% | 2.24% | 2.28% | 39.64% | 42.35% | link | undetermined undetermined
Lane | Sample name | Description | Index | Project | Raw Cluster | Passing Filter (%) | PF Cluster | Base PF Mean Quality Score | Q30 (%) | Sample in Lane (%) | Recoverable Raw Cluster | Recoverable PF Cluster | Cluster Recovery Report | Basic Statistics | Per Base Quality Scores | Per Tile Sequence Quality | Per Sequence Quality Scores | Per Base Sequence Content | Per Sequence GC Content | N Content | Sequence Length Distribution | Duplication Level | Overrepresented Sequences | Adapter Content | Kmer Content | Bad Tiles | FastQ Screen mapped on adapters (%) | FastQ Screen mapped on lsuref (%) | FastQ Screen mapped on ssuref (%) | FastQ Screen mapped on phix (%) | FastQ Screen mapped except. Ref. Genome (%) | FastQ Screen Report | Sample_Project name

_