Package fr.ens.biologie.genomique.eoulsan.bio.io.hadoop

Class FastqOutputFormat

java.lang.Object

org.apache.hadoop.mapreduce.OutputFormat<K,V>

org.apache.hadoop.mapreduce.lib.output.FileOutputFormat<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>

fr.ens.biologie.genomique.eoulsan.bio.io.hadoop.FastqOutputFormat

public class FastqOutputFormat
extends org.apache.hadoop.mapreduce.lib.output.FileOutputFormat<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>

This class define a FASTQ output format.

Since:

2.0

Author:

Laurent Jourdren

Nested Class Summary

Nested classes/interfaces inherited from class org.apache.hadoop.mapreduce.lib.output.FileOutputFormat

org.apache.hadoop.mapreduce.lib.output.FileOutputFormat.Counter

Field Summary

Fields inherited from class org.apache.hadoop.mapreduce.lib.output.FileOutputFormat

BASE_OUTPUT_NAME, COMPRESS, COMPRESS_CODEC, COMPRESS_TYPE, OUTDIR, PART

Constructor Summary

Constructors

Constructor	Description
FastqOutputFormat()

Method Summary

Modifier and Type	Method	Description
org.apache.hadoop.mapreduce.RecordWriter<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>	getRecordWriter(org.apache.hadoop.mapreduce.TaskAttemptContext context)

Methods inherited from class org.apache.hadoop.mapreduce.lib.output.FileOutputFormat

checkOutputSpecs, getCompressOutput, getDefaultWorkFile, getOutputCommitter, getOutputCompressorClass, getOutputName, getOutputPath, getPathForWorkFile, getUniqueFile, getWorkOutputPath, setCompressOutput, setOutputCompressorClass, setOutputName, setOutputPath

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastqOutputFormat

public FastqOutputFormat()

Method Detail

getRecordWriter

public org.apache.hadoop.mapreduce.RecordWriter<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text> getRecordWriter(org.apache.hadoop.mapreduce.TaskAttemptContext context)
                                                                                                                    throws IOException,
                                                                                                                           InterruptedException

Specified by:

getRecordWriter in class org.apache.hadoop.mapreduce.lib.output.FileOutputFormat<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>

Throws:

IOException

InterruptedException