Package fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters

Class PBSProTaskScheduler

java.lang.Object

fr.ens.biologie.genomique.eoulsan.core.schedulers.AbstractTaskScheduler

fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.AbstractClusterTaskScheduler

fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.BpipeTaskScheduler

fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.BundledScriptBpipeTaskScheduler

fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.PBSProTaskScheduler

All Implemented Interfaces:

ClusterTaskScheduler, TaskScheduler

public class PBSProTaskScheduler
extends BundledScriptBpipeTaskScheduler

This class define a PBSPro cluster scheduler using a Bpipe script.

Since:

2.0

Author:

Laurent Jourdren

Nested Class Summary

Nested classes/interfaces inherited from class fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.AbstractClusterTaskScheduler

AbstractClusterTaskScheduler.ProcessThreadOutput

Nested classes/interfaces inherited from interface fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.ClusterTaskScheduler

ClusterTaskScheduler.StatusResult, ClusterTaskScheduler.StatusValue

Field Summary

Fields

Modifier and Type	Field	Description
static String	SCHEDULER_NAME

Constructor Summary

Constructors

Constructor	Description
PBSProTaskScheduler()	Constructor.

Method Summary

Methods inherited from class fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.BundledScriptBpipeTaskScheduler

getBpipeCommandWrapper, getSchedulerName

Methods inherited from class fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.BpipeTaskScheduler

additionalScriptEnvironment, cleanupJob, configure, statusJob, stopJob, submitJob

Methods inherited from class fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.AbstractClusterTaskScheduler

stop, submit

Methods inherited from class fr.ens.biologie.genomique.eoulsan.core.schedulers.AbstractTaskScheduler

afterExecuteTask, beforeExecuteTask, executeTask, getResult, getStatus, getStep, getStep, getTaskDoneCount, getTaskRunningCount, getTaskSubmittedCount, getTotalTaskDoneCount, getTotalTaskRunningCount, getTotalTaskSubmittedCount, isStarted, isStopped, start, submit, waitEndOfTasks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface fr.ens.biologie.genomique.eoulsan.core.schedulers.TaskScheduler

getResult, getStatus, getTaskDoneCount, getTaskRunningCount, getTaskSubmittedCount, getTotalTaskDoneCount, getTotalTaskRunningCount, getTotalTaskSubmittedCount, start, submit, waitEndOfTasks

Field Detail

SCHEDULER_NAME

public static final String SCHEDULER_NAME

See Also:

Constant Field Values

Constructor Detail

PBSProTaskScheduler

public PBSProTaskScheduler()

Constructor.