TGCCTaskScheduler (Eoulsan 2.6.1 API)

java.lang.Object
- fr.ens.biologie.genomique.eoulsan.core.schedulers.AbstractTaskScheduler
- - fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.AbstractClusterTaskScheduler
  - - fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.BpipeTaskScheduler
    - - fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.TGCCTaskScheduler

All Implemented Interfaces:

ClusterTaskScheduler, TaskScheduler
```
public class TGCCTaskScheduler
extends BpipeTaskScheduler
```
This class define a TGCC cluster scheduler. This scheduler is based on the Bpipe slurm script.

Since:

2.0

Author:

Laurent Jourdren

Nested Class Summary
- Nested classes/interfaces inherited from class fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.AbstractClusterTaskScheduler
  AbstractClusterTaskScheduler.ProcessThreadOutput
- Nested classes/interfaces inherited from interface fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.ClusterTaskScheduler
  ClusterTaskScheduler.StatusResult, ClusterTaskScheduler.StatusValue

Field Summary

Fields
Modifier and Type Field Description

static String SCHEDULER_NAME

Constructor Summary

Constructors
Constructor Description

TGCCTaskScheduler()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected File`	`getBpipeCommandWrapper()`	Get the path to the Bpipe command wrapper.
`String`	`getSchedulerName()`	Get the scheduler name.

Methods inherited from class fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.BpipeTaskScheduler
additionalScriptEnvironment, cleanupJob, configure, statusJob, stopJob, submitJob

Methods inherited from class fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters.AbstractClusterTaskScheduler
stop, submit

Methods inherited from class fr.ens.biologie.genomique.eoulsan.core.schedulers.AbstractTaskScheduler
afterExecuteTask, beforeExecuteTask, executeTask, getResult, getStatus, getStep, getStep, getTaskDoneCount, getTaskRunningCount, getTaskSubmittedCount, getTotalTaskDoneCount, getTotalTaskRunningCount, getTotalTaskSubmittedCount, isStarted, isStopped, start, submit, waitEndOfTasks

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface fr.ens.biologie.genomique.eoulsan.core.schedulers.TaskScheduler
getResult, getStatus, getTaskDoneCount, getTaskRunningCount, getTaskSubmittedCount, getTotalTaskDoneCount, getTotalTaskRunningCount, getTotalTaskSubmittedCount, start, submit, waitEndOfTasks

- Field Detail
  - SCHEDULER_NAME
```
public static final String SCHEDULER_NAME
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - TGCCTaskScheduler
```
public TGCCTaskScheduler()
```
- Method Detail
  - getSchedulerName
```
public String getSchedulerName()
```
    Description copied from interface: ClusterTaskScheduler
    
    Get the scheduler name.
    
    Returns:
    
    the name of the scheduler
  - getBpipeCommandWrapper
```
protected File getBpipeCommandWrapper()
```
    Description copied from class: BpipeTaskScheduler
    
    Get the path to the Bpipe command wrapper.
    
    Specified by:
    
    getBpipeCommandWrapper in class BpipeTaskScheduler
    
    Returns:
    
    the File object with the path to the Bpipe command wrapper