Class DESeq2Module

  • All Implemented Interfaces:
    Module

    public class DESeq2Module
    extends AbstractModule
    Class to run the differential analysis with DEseq2
    Since:
    2.0
    Author:
    Xavier Bauquet
    • Constructor Detail

      • DESeq2Module

        public DESeq2Module()
    • Method Detail

      • getName

        public String getName()
        Description copied from interface: Module
        Get the name of the module.
        Returns:
        the name of the module
      • getVersion

        public fr.ens.biologie.genomique.kenetre.util.Version getVersion()
        Description copied from interface: Module
        Get version of the Module.
        Returns:
        a Version object with the version of the Module
      • execute

        public TaskResult execute​(TaskContext context,
                                  TaskStatus status)
        Description copied from interface: Module
        Execute a task step.
        Parameters:
        context - Execution context
        status - of the task