Package fr.ens.biologie.genomique.eoulsan.modules.mapping.local

This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step in local mode.

Since:

1.0

Class Summary

Class	Description
BAM2SAMLocalModule	This class define a module for converting BAM files into SAM.
ReadsFilterLocalModule	This class define a module for reads filtering.
ReadsMapperLocalModule	This class define a module for reads mapping.
SAM2BAMLocalModule	This class define a module for converting SAM files into BAM.
SAM2FASTQLocalModule	This class define a module for converting SAM files into FASTQ.
SAMFilterLocalModule	This class define a Step for alignments filtering.
Splice2BEDModule	This class define a module for converting SAM files into BED.