Package fr.ens.biologie.genomique.eoulsan

Class Common

java.lang.Object
fr.ens.biologie.genomique.eoulsan.Common
public final class Common extends Object
This class define common constants.
Since:
1.0
Author:
Laurent Jourdren

  • Method Details

    • writeLog

      public static void writeLog(OutputStream os, long startTime, String data) throws IOException
      Write log data.
      Parameters:
      os - OutputStream of the log file
      startTime - startTime of Eoulsan
      data - data to write
      Throws:
      IOException - if an error occurs while writing log file

    • writeLog

      public static void writeLog(File file, long startTime, String data) throws IOException
      Write log data.
      Parameters:
      file - the log file
      startTime - startTime of Eoulsan
      data - data to write
      Throws:
      IOException - if an error occurs while writing log file

    • showMessageAndExit

      public static void showMessageAndExit(String message)
      Show a message and then exit.
      Parameters:
      message - the message to show

    • showAndLogErrorMessage

      public static void showAndLogErrorMessage(String message)
      Show and log an error message.
      Parameters:
      message - message to show and log

    • showErrorMessageAndExit

      public static void showErrorMessageAndExit(String message)
      Show a message and then exit.
      Parameters:
      message - the message to show

    • errorExit

      public static void errorExit(Throwable e, String message)
      Print error message to the user and exits the application.
      Parameters:
      e - Exception
      message - message to show to the use

    • errorExit

      public static void errorExit(Throwable e, String message, boolean logMessage)
      Print error message to the user and exits the application.
      Parameters:
      e - Exception
      message - message to show to the use
      logMessage - true if message must be logged

    • errorHalt

      public static void errorHalt(Throwable e, String message)
      Print error message to the user and halts the application.
      Parameters:
      e - Exception
      message - message to show to the use

    • errorHalt

      public static void errorHalt(Throwable e, String message, boolean logMessage)
      Print error message to the user and halts the application.
      Parameters:
      e - Exception
      message - message to show to the use
      logMessage - true if message must be logged

    • exit

      public static void exit(int exitCode)
      Exit the application.
      Parameters:
      exitCode - exit code

    • halt

      public static void halt(int exitCode)
      Exit the application.
      Parameters:
      exitCode - exit code

    • sendMail

      public static void sendMail(String subject, String message)
      Send email.
      Parameters:
      subject - email subject
      message - message of the email

    • getThreadsNumber

      public static int getThreadsNumber(int localThreads, int maxLocalThreads)
      Get the number of threads to use from localThreads, maxLocalThreads and global threads number.
      Parameters:
      localThreads - number of threads
      maxLocalThreads - maximum number of threads
      Returns:
      the number of threads to use

    • printWarning

      public static void printWarning(String message)
      Print warning.
      Parameters:
      message - message to print