Package fr.ens.biologie.genomique.eoulsan.data.storages

Class DataFileStorage

java.lang.Object

fr.ens.biologie.genomique.kenetre.storage.AbstractFileStorage

fr.ens.biologie.genomique.eoulsan.data.storages.DataFileStorage

public class DataFileStorage
extends fr.ens.biologie.genomique.kenetre.storage.AbstractFileStorage

This class define a storage using DataFile API.

Since:

2.6

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
DataFileStorage(String rootPath, List<String> extensions)	Constructor.

Method Summary

Modifier and Type	Method	Description
DataFile	getDataFile(String shortName)	Get a Datafile related to a short name
File	getFile(String shortName)	Get a file related to a short name
protected fr.ens.biologie.genomique.kenetre.storage.DataPath	newDataPath(fr.ens.biologie.genomique.kenetre.storage.DataPath parent, String filename)
protected fr.ens.biologie.genomique.kenetre.storage.DataPath	newDataPath(String source)

Methods inherited from class fr.ens.biologie.genomique.kenetre.storage.AbstractFileStorage

getDataPath, getExtensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DataFileStorage

public DataFileStorage(String rootPath,
                       List<String> extensions)

Constructor.

Parameters:

rootPath - root of the storage

extensions - extension of the files

Method Detail

newDataPath

protected fr.ens.biologie.genomique.kenetre.storage.DataPath newDataPath(String source)

Specified by:

newDataPath in class fr.ens.biologie.genomique.kenetre.storage.AbstractFileStorage

newDataPath

protected fr.ens.biologie.genomique.kenetre.storage.DataPath newDataPath(fr.ens.biologie.genomique.kenetre.storage.DataPath parent,
                                                                         String filename)

Specified by:

newDataPath in class fr.ens.biologie.genomique.kenetre.storage.AbstractFileStorage

getDataFile

public DataFile getDataFile(String shortName)
                     throws IOException

Get a Datafile related to a short name

Parameters:

shortName - the short name of a file

Returns:

a DataFile

Throws:

IOException - if the file cannot be found

getFile

public File getFile(String shortName)
             throws IOException

Get a file related to a short name

Overrides:

getFile in class fr.ens.biologie.genomique.kenetre.storage.AbstractFileStorage

Parameters:

shortName - the short name of a file

Returns:

a DataFile

Throws:

IOException - if the file cannot be found