Package fr.ens.biologie.genomique.eoulsan.design

Interface SampleMetadata

All Superinterfaces:
Metadata
public interface SampleMetadata extends Metadata
This interface defines the sample metadata.
Since:
2.0
Author:
Xavier Bauquet

  • Field Details

  • Method Details

    • getReads

      List<String> getReads()
      Get the reads as a list.
      Returns:
      the list of reads

    • getDescription

      String getDescription()
      Get the description.
      Returns:
      the description

    • getOperator

      String getOperator()
      Get the operator.
      Returns:
      the operator

    • getComment

      String getComment()
      Get the comment.
      Returns:
      the comment

    • getDate

      String getDate()
      Get the date.
      Returns:
      the date

    • getSerialNumber

      String getSerialNumber()
      Get the serial number.
      Returns:
      the serial number

    • getUUID

      String getUUID()
      Get the UUID.
      Returns:
      the UUID

    • getRepTechGroup

      String getRepTechGroup()
      Get the RepTechGroup.
      Returns:
      the RepTechGroup

    • getReference

      String getReference()
      Get the reference.
      Returns:
      the reference

    • isReference

      boolean isReference()
      Get the reference.
      Returns:
      the reference

    • getFastqFormat

      fr.ens.biologie.genomique.kenetre.bio.FastqFormat getFastqFormat()
      Get the fastq format.
      Returns:
      the fastq format

    • getCondition

      String getCondition()
      Get the condition.
      Returns:
      the condition

    • setReads

      void setReads(List<String> newReads)
      Set the reads.
      Parameters:
      newReads - the new reads

    • setDescription

      void setDescription(String newDescription)
      Set the description.
      Parameters:
      newDescription - the new description

    • setOperator

      void setOperator(String newOperator)
      Set the operator.
      Parameters:
      newOperator - the new operator

    • setComment

      void setComment(String newComment)
      Set the comment.
      Parameters:
      newComment - the new comment

    • setDate

      void setDate(String newDate)
      Set the date.
      Parameters:
      newDate - the new date

    • setSerialNumber

      void setSerialNumber(String newSerialNumber)
      Set the serial number.
      Parameters:
      newSerialNumber - the new serial number

    • setUUID

      void setUUID(String newUUID)
      Set the UUID.
      Parameters:
      newUUID - the new UUID

    • setRepTechGroup

      void setRepTechGroup(String newReptechGroup)
      Set the ReptechGroup.
      Parameters:
      newReptechGroup - the new ReptechGroup

    • setReference

      void setReference(String newReference)
      Set the reference.
      Parameters:
      newReference - the new reference

    • setFastqFormat

      void setFastqFormat(fr.ens.biologie.genomique.kenetre.bio.FastqFormat newfastqFormat)
      Set the fastq format.
      Parameters:
      newfastqFormat - the new fastq format

    • setCondition

      void setCondition(String newCondition)
      Set the condition.
      Parameters:
      newCondition - the new condition

    • containsReads

      boolean containsReads()
      Test if the reads field exists.
      Returns:
      true if the reads field exists

    • containsDescription

      boolean containsDescription()
      Test if the description field exists.
      Returns:
      true if the description field exists

    • containsOperator

      boolean containsOperator()
      Test if the operator field exists.
      Returns:
      true if the operator field exists

    • containsComment

      boolean containsComment()
      Test if the comment field exists.
      Returns:
      true if the comment field exists

    • containsDate

      boolean containsDate()
      Test if the date field exists.
      Returns:
      true if the date field exists

    • containsSerialNumber

      boolean containsSerialNumber()
      Test if the serial number field exists.
      Returns:
      true if the serial number field exists

    • containsUUID

      boolean containsUUID()
      Test if the UUID field exists.
      Returns:
      true if the UUID field exists

    • containsRepTechGroup

      boolean containsRepTechGroup()
      Test if the RepTechGroup field exists.
      Returns:
      true if the RepTechGroup field exists

    • containsReference

      boolean containsReference()
      Test if the reference field exists.
      Returns:
      true if the reference field exists

    • containsFastqFormat

      boolean containsFastqFormat()
      Test if the fastq format field exists.
      Returns:
      true if the fastq format field exists

    • containsCondition

      boolean containsCondition()
      Test if the condition field exists.
      Returns:
      true if the condition field exists