Uses of Interface
fr.ens.biologie.genomique.eoulsan.galaxytools.elements.ToolElement

Packages that use ToolElement

Package	Description
fr.ens.biologie.genomique.eoulsan.galaxytools	This package contain classes related to read tool xml file from galaxy.
fr.ens.biologie.genomique.eoulsan.galaxytools.elements	This package contain classes related to parameter extractions from XML Galaxy tool xml files.

Uses of ToolElement in fr.ens.biologie.genomique.eoulsan.galaxytools

Methods in fr.ens.biologie.genomique.eoulsan.galaxytools that return types with arguments of type ToolElement

Modifier and Type	Method	Description
static Map<String,ToolElement>	GalaxyToolXMLParserUtils.extractConditionalParamElement(ToolInfo toolInfo, Element parent)	Extract conditional param element.
static Map<String,ToolElement>	GalaxyToolXMLParserUtils.extractConditionalParamElement(ToolInfo toolInfo, Element parent, Map<String,Parameter> stepParameters)	Extract conditional param element.
static Map<String,ToolElement>	GalaxyToolXMLParserUtils.extractInputs(ToolInfo toolInfo, Document doc, Map<String,Parameter> stepParameters)	Extract all input parameters define in document.
static Map<String,ToolElement>	GalaxyToolXMLParserUtils.extractOutputs(ToolInfo toolInfo, Document doc, Map<String,Parameter> stepParameters)	Extract all output parameters define in document.
static Map<String,ToolElement>	GalaxyToolXMLParserUtils.extractParamElement(ToolInfo toolInfo, Element parent, String elementName)	Extract parameter elements.
static Map<String,ToolElement>	GalaxyToolXMLParserUtils.extractParamElement(ToolInfo toolInfo, Element parent, String elementName, Map<String,Parameter> stepParameters)	Extract parameter elements.
Map<String,ToolElement>	GalaxyToolInterpreter.getInputs()	Gets the inputs.
Map<String,ToolElement>	GalaxyToolInterpreter.getOutputs()	Gets the outputs.

Methods in fr.ens.biologie.genomique.eoulsan.galaxytools with parameters of type ToolElement

Modifier and Type	Method	Description
static void	GalaxyToolXMLParserUtils.setElementValue(ToolElement toolElement, Map<String,Parameter> stepParameters)	Set the tool element value.

Uses of ToolElement in fr.ens.biologie.genomique.eoulsan.galaxytools.elements

Classes in fr.ens.biologie.genomique.eoulsan.galaxytools.elements that implement ToolElement

Modifier and Type	Class	Description
class	AbstractParameterToolElement	This class define an abstract class for tool element parameters.
class	AbstractToolElement	This class define an abstract tool element.
class	BooleanParameterToolElement	This class define a boolean tool element parameter.
class	ConditionalToolElement	This class define a conditional tool element.
class	DataToolElement	The Class ToolOutputsData.
class	EmptyToolElement	This class define an empty tool element.
class	FloatParameterToolElement	This class define a float tool element parameter.
class	IntegerParameterToolElement	This class define an integer tool element parameter.
class	SelectParameterToolElement	This class define a select tool element parameter.
class	TextParameterToolElement	This class define a text tool element parameter.

Methods in fr.ens.biologie.genomique.eoulsan.galaxytools.elements that return ToolElement

Modifier and Type	Method	Description
ToolElement	ConditionalToolElement.getToolElementSelected()	Gets the tool parameter selected.
static ToolElement	ToolElementFactory.newToolElement(ToolInfo toolInfo, Element param)	Gets the instance tool element.
static ToolElement	ToolElementFactory.newToolElement(ToolInfo toolInfo, Element tag, String nameSpace)	Gets the instance tool element.

Methods in fr.ens.biologie.genomique.eoulsan.galaxytools.elements that return types with arguments of type ToolElement

Modifier and Type	Method	Description
Map<String,ToolElement>	ConditionalToolElement.getToolElementsResult()	Gets the tool parameters result.