Package fr.ens.biologie.genomique.eoulsan.modules.diffana

Class AbstractEasyContrasts

java.lang.Object

fr.ens.biologie.genomique.eoulsan.modules.diffana.AbstractEasyContrasts

Direct Known Subclasses:

EasyContrasts1, EasyContrasts2

public abstract class AbstractEasyContrasts
extends Object

This class contains methods to run the differential analysis module DESeq2.

Since:

2.0

Author:

Xavier Bauquet

Method Summary

Modifier and Type	Method	Description
void	runDEseq2(DataFile workflowOutputDir)	Method to run DESeq2.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

runDEseq2

public void runDEseq2(DataFile workflowOutputDir)
               throws IOException,
EoulsanException

Method to run DESeq2.

Parameters:

workflowOutputDir - workflow output directory

Throws:

IOException - if writeDeseq2Design fails

EoulsanException - if the comparisons value is not correct