Uses of Package
fr.ens.biologie.genomique.eoulsan.modules.diffana

Packages that use fr.ens.biologie.genomique.eoulsan.modules.diffana

Package	Description
fr.ens.biologie.genomique.eoulsan.modules.diffana	This package contain all the classes related to the differential analysis step.

Classes in fr.ens.biologie.genomique.eoulsan.modules.diffana used by fr.ens.biologie.genomique.eoulsan.modules.diffana

Class	Description
AbstractEasyContrasts	This class contains methods to run the differential analysis module DESeq2.
DESeq2Parameters.FitType	Enum for the fitType option in DESeq2 related to the dispersion estimation.
DESeq2Parameters.SizeFactorsType	Enum for the sizeFactorsType option in DESeq2 related to the estimation of the size factor.
DESeq2Parameters.StatisticTest	Enum for the statisticTest option in DESeq2 related to the statistic test to be used during the differential expression analysis
DiffAna.DispersionFitType	Dispersion estimation fitType enum for DESeq differential analysis
DiffAna.DispersionMethod	Dispersion estimation method enum for DESeq differential analysis
DiffAna.DispersionSharingMode	Dispersion estimation sharingMode enum for DESeq differential analysis
Normalization	This class create and launch an R script to compute normalisation of expression data