Package fr.ens.biologie.genomique.eoulsan.modules.expression

Class FinalExpressionFeaturesCreator

java.lang.Object
fr.ens.biologie.genomique.eoulsan.modules.expression.FinalExpressionFeaturesCreator
public class FinalExpressionFeaturesCreator extends Object
This class generates the final expression file after counting the alignments for each feature with HTSeq-count.
Since:
1.2
Author:
Claire Wallon

  • Constructor Details

    • FinalExpressionFeaturesCreator

      public FinalExpressionFeaturesCreator(fr.ens.biologie.genomique.kenetre.bio.expressioncounter.ExpressionCounter counter)
      Public constructor.
      Parameters:
      counter - the counter

  • Method Details

    • initializeExpressionResults

      public void initializeExpressionResults()
      Clear.

    • loadPreResults

      public void loadPreResults(File preResultFile) throws IOException
      Load pre result file.
      Parameters:
      preResultFile - pre-result file
      Throws:
      IOException - if an error occurs while reading data

    • loadPreResults

      public void loadPreResults(InputStream is) throws IOException
      Load pre-result file.
      Parameters:
      is - input stream of pre-results
      Throws:
      IOException - if an error occurs while reading data

    • saveFinalResults

      public void saveFinalResults(File resultFile) throws IOException
      Save the final results.
      Parameters:
      resultFile - output result file
      Throws:
      IOException - if an error occurs while writing data

    • saveFinalResults

      public void saveFinalResults(OutputStream os) throws IOException
      Save the final results.
      Parameters:
      os - output stream
      Throws:
      IOException - if an error occurs while writing data