Package fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop

package fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop

This package contain all the classes related to the expression step in hadoop mode.

Since:

1.0

Related Packages

Package	Description
fr.ens.biologie.genomique.eoulsan.modules.expression	This package contain all the classes related to the expression step.
fr.ens.biologie.genomique.eoulsan.modules.expression.local	This package contain all the classes related to the expression step in local mode.

Classes

Class	Description
ExpressionHadoopModule	This class is the main class for the expression program of the reads in hadoop mode.
ExpressionMapper	Mapper for the expression estimation.
ExpressionReducer	Reducer for the expression estimation.
ExpressionSAMOutputMapper	Mapper for the expression estimation with a SAM output.
PreTreatmentExpressionMapper	This class define a mapper for the pretreatment of paired-end data before the expression estimation step.
PreTreatmentExpressionReducer	This class define a reducer for the pretreatment of paired-end data before the expression estimation step.