Package fr.ens.biologie.genomique.eoulsan.modules.expression.local

Class ExpressionLocalModule

java.lang.Object

fr.ens.biologie.genomique.eoulsan.modules.AbstractModule

fr.ens.biologie.genomique.eoulsan.modules.expression.AbstractExpressionModule

fr.ens.biologie.genomique.eoulsan.modules.expression.local.ExpressionLocalModule

All Implemented Interfaces:

Module

public class ExpressionLocalModule
extends AbstractExpressionModule

This class is the module to compute expression in local mode

Since:

1.0

Author:

Laurent Jourdren, Claire Wallon

Field Summary

Fields inherited from class fr.ens.biologie.genomique.eoulsan.modules.expression.AbstractExpressionModule

COUNTER_PARAMETER_NAME, FEATURES_FILE_FORMAT_PARAMETER_NAME, MODULE_NAME, OUTPUT_FILE_FORMAT_PARAMETER_NAME

Constructor Summary

Constructors

Constructor	Description
ExpressionLocalModule()

Method Summary

Modifier and Type	Method	Description
TaskResult	execute(TaskContext context, TaskStatus status)	Execute a task step.

Methods inherited from class fr.ens.biologie.genomique.eoulsan.modules.expression.AbstractExpressionModule

configure, getDescription, getInputPorts, getName, getOutputPorts, getVersion

Methods inherited from class fr.ens.biologie.genomique.eoulsan.modules.AbstractModule

getChecker, getParallelizationMode, getRequiredEoulsanVersion, getRequirements

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ExpressionLocalModule

public ExpressionLocalModule()

Method Details

execute

public TaskResult execute(TaskContext context,
 TaskStatus status)

Description copied from interface: Module

Execute a task step.

Parameters:

context - Execution context

status - of the task

Returns:

a TaskResult object