Package fr.ens.biologie.genomique.eoulsan.modules.fastqc

Interface CounterSequenceFile

All Superinterfaces:
uk.ac.babraham.FastQC.Sequence.SequenceFile
All Known Implementing Classes:
FastqSequenceFile, SAMSequenceFile
public interface CounterSequenceFile extends uk.ac.babraham.FastQC.Sequence.SequenceFile
This interface extends SequenceFile to add a getCount() method that allow to get the count of the read entries.
Since:
2.0
Author:
Laurent Jourdren

  • Method Summary

    Modifier and Type
    Method
    Description
    long
    getCount()
    Get the count of the read entries.

    Methods inherited from interface uk.ac.babraham.FastQC.Sequence.SequenceFile

    getFile, getPercentComplete, hasNext, isColorspace, name, next

  • Method Details

    • getCount

      long getCount()
      Get the count of the read entries.
      Returns:
      the count of the read entries