Package fr.ens.biologie.genomique.eoulsan.modules.fastqc

Class EmptyFileQC

java.lang.Object

uk.ac.babraham.FastQC.Modules.AbstractQCModule

fr.ens.biologie.genomique.eoulsan.modules.fastqc.EmptyFileQC

All Implemented Interfaces:

uk.ac.babraham.FastQC.Modules.QCModule

public class EmptyFileQC
extends uk.ac.babraham.FastQC.Modules.AbstractQCModule

Empty file FastQC module.

Since:

2.0

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
EmptyFileQC(DataFile file)	Constructor.

Method Summary

Modifier and Type	Method	Description
String	description()
JPanel	getResultsPanel()
boolean	ignoreFilteredSequences()
boolean	ignoreInReport()
void	makeReport(uk.ac.babraham.FastQC.Report.HTMLReportArchive report)
String	name()
void	processSequence(uk.ac.babraham.FastQC.Sequence.Sequence sequence)
boolean	raisesError()
boolean	raisesWarning()
void	reset()

Methods inherited from class uk.ac.babraham.FastQC.Modules.AbstractQCModule

simpleXhtmlReport, writeTable, writeTextTable, writeXhtmlTable

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EmptyFileQC

public EmptyFileQC(DataFile file)

Constructor.

Parameters:

file - The file

Method Detail

description

public String description()

ignoreFilteredSequences

public boolean ignoreFilteredSequences()

getResultsPanel

public JPanel getResultsPanel()

reset

public void reset()

name

public String name()

processSequence

public void processSequence(uk.ac.babraham.FastQC.Sequence.Sequence sequence)

raisesError

public boolean raisesError()

raisesWarning

public boolean raisesWarning()

ignoreInReport

public boolean ignoreInReport()

makeReport

public void makeReport(uk.ac.babraham.FastQC.Report.HTMLReportArchive report)
                throws XMLStreamException,
                       IOException

Throws:

XMLStreamException

IOException