Package fr.ens.biologie.genomique.eoulsan.modules.generators

Class GenomeDescriptionGeneratorModule

java.lang.Object
fr.ens.biologie.genomique.eoulsan.modules.AbstractModule
fr.ens.biologie.genomique.eoulsan.modules.generators.GenomeDescriptionGeneratorModule
All Implemented Interfaces:
Module
public class GenomeDescriptionGeneratorModule extends AbstractModule
This class implements a genome description generator module.
Since:
1.0
Author:
Laurent Jourdren

  • Field Details

  • Constructor Details

    • GenomeDescriptionGeneratorModule

      public GenomeDescriptionGeneratorModule()

  • Method Details

    • getName

      public String getName()
      Description copied from interface: Module
      Get the name of the module.
      Returns:
      the name of the module

    • getDescription

      public String getDescription()
      Description copied from interface: Module
      Get the description of the module
      Specified by:
      getDescription in interface Module
      Overrides:
      getDescription in class AbstractModule
      Returns:
      the description of the module

    • getVersion

      public fr.ens.biologie.genomique.kenetre.util.Version getVersion()
      Description copied from interface: Module
      Get version of the Module.
      Returns:
      a Version object with the version of the Module

    • getInputPorts

      public InputPorts getInputPorts()
      Description copied from interface: Module
      Get the input data format.
      Specified by:
      getInputPorts in interface Module
      Overrides:
      getInputPorts in class AbstractModule
      Returns:
      a set with DataFormat or null if the module does not any need input format

    • getOutputPorts

      public OutputPorts getOutputPorts()
      Description copied from interface: Module
      Get the output data format.
      Specified by:
      getOutputPorts in interface Module
      Overrides:
      getOutputPorts in class AbstractModule
      Returns:
      an set with DataFormat or null if the module does not produce any output data

    • execute

      public TaskResult execute(TaskContext context, TaskStatus status)
      Description copied from interface: Module
      Execute a task step.
      Parameters:
      context - Execution context
      status - of the task
      Returns:
      a TaskResult object