Package fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop.hadoopbamcli

package fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop.hadoopbamcli

Related Packages

Package	Description
fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop	This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step in hadoop mode.

Classes

Class	Description
CLIMergingAnySAMOutputFormat<K>	Like a KeyIgnoringAnySAMOutputFormat, but sets the SAMFileHeader to Utils.getSAMHeaderMerger().getMergedHeader() and allows the output directory (the "work directory") to exist.
ContextUtil	Utility methods to allow applications to deal with inconsistencies between MapReduce Context Objects API between hadoop-0.20 and later versions.
Utils