Package fr.ens.biologie.genomique.eoulsan.splitermergers

Class FastqSplitter

java.lang.Object

fr.ens.biologie.genomique.eoulsan.splitermergers.FastqSplitter

All Implemented Interfaces:

Splitter

public class FastqSplitter
extends Object
implements Splitter

This class define a splitter class for FASTQ files.

Since:

2.0

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
FastqSplitter()

Method Summary

Modifier and Type	Method	Description
void	configure(Set<Parameter> conf)	Configure the splitter.
DataFormat	getFormat()	Get the format related to the splitter.
void	split(DataFile inFile, Iterator<DataFile> outFileIterator)	Split data.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FastqSplitter

public FastqSplitter()

Method Details

getFormat

public DataFormat getFormat()

Description copied from interface: Splitter

Get the format related to the splitter.

Specified by:

getFormat in interface Splitter

Returns:

a DataFormat object

configure

public void configure(Set<Parameter> conf)
               throws EoulsanException

Description copied from interface: Splitter

Configure the splitter.

Specified by:

configure in interface Splitter

Parameters:

conf - configuration

Throws:

EoulsanException - if the configuration is invalid

split

public void split(DataFile inFile,
 Iterator<DataFile> outFileIterator)
           throws IOException

Description copied from interface: Splitter

Split data.

Specified by:

split in interface Splitter

Parameters:

inFile - input DataFile

outFileIterator - iterator over DataFile to create

Throws:

IOException - if an error occurs while split data