Class AbstractLaneTest
- java.lang.Object
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- fr.ens.biologie.genomique.aozan.tests.lane.AbstractLaneTest
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- Direct Known Subclasses:
AbstractSimpleLaneTest
,PFClusterPercentLaneTest
,PhasingPrephasingPercentLaneTest
,PhiXAlignPercentLaneTest
,PhiXRawClusterCountLaneTest
,Q30PercentLaneTest
public abstract class AbstractLaneTest extends Object implements LaneTest
This class define a abstract Lane test.- Since:
- 0.8
- Author:
- Laurent Jourdren
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Constructor Summary
Constructors Modifier Constructor Description protected
AbstractLaneTest(String name, String description, String columnName)
Constructor that set the field of this abstract test.protected
AbstractLaneTest(String name, String description, String columnName, String unit)
Constructor that set the field of this abstract test.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getColumnName()
Get the column name of the test in the QC result file.String
getDescription()
Get the description of the test.String
getName()
Get the name of the test.String
getUnit()
Get the unit of the result of the test.void
init()
Initialize the test.-
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface fr.ens.biologie.genomique.aozan.tests.AozanTest
configure, getCollectorsNamesRequiered
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Method Detail
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getName
public String getName()
Description copied from interface:AozanTest
Get the name of the test.
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getDescription
public String getDescription()
Description copied from interface:AozanTest
Get the description of the test.- Specified by:
getDescription
in interfaceAozanTest
- Returns:
- the description of the test
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getColumnName
public String getColumnName()
Description copied from interface:AozanTest
Get the column name of the test in the QC result file.- Specified by:
getColumnName
in interfaceAozanTest
- Returns:
- the coloumn name of the test
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getUnit
public String getUnit()
Description copied from interface:AozanTest
Get the unit of the result of the test.
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