Package fr.ens.biologie.genomique.aozan.tests.lane
This package contains class of lane tests which defines the collector to
launch and creates a report of a quality control.
- Since:
- 1.3
-
Interface Summary Interface Description LaneTest This interface define a test on lane. -
Class Summary Class Description AbstractLaneTest This class define a abstract Lane test.AbstractSimpleLaneTest This class define a simple lane test.ClusterDensityLaneTest This class define a lane test on cluster density.ClusterDensityPFLaneTest This class define a lane test on cluster density.Cycle100ErrorRateLaneTest This class define a test on error rate on 100 cycle.Cycle20IntensityPercentLaneTest This class define a test on percent of intensity at cycle 20.Cycle35ErrorRateLaneTest This class define a test on error rate on 35 cycle.Cycle75ErrorRateLaneTest This class define a test on error rate on 75 cycle.DensityLaneTest This class define a density lane test.ErrorRateLaneTest This class define a test on error rate.FirstCycleIntensityLaneTest This class define a test on first cycle intensity.OccupancyPercentLaneTest This class define an occupancy percent lane test.PFClusterCountLaneTest This class define a Passing Filter cluster lane test.PFClusterPercentLaneTest This class a test on passing filter cluster in a lane.PhasingPrephasingPercentLaneTest This class define a lane test on phasing / prephasing.PhiXAlignPercentLaneTest This class define a lane test on PhiX percent aligned.PhiXRawClusterCountLaneTest This class define a lane test on PhiX raw cluster count.Q30PercentLaneTest This class define a Q30 percent lane test.RawClusterCountLaneTest This class define a raw cluster test.YieldLaneTest This class define a yield lane test.YieldPFLaneTest This class define a yield passing filter lane test.