Package fr.ens.biologie.genomique.aozan.fastqscreen
This package contains a module fastqscreen for the contamination detection in
each sample of a run.
- Since:
- 1.0
-
Class Summary Class Description FastqScreen This class execute fastqscreen pair-end mode or single-end.FastqScreenGenomes This class read the alias genome file.FastqScreenProjectReport The class set a project HTML report file on detection contamination by compilation report on samples.FastqScreenPseudoMapReduce This class account reads that map to each of the reference genome.FastqScreenResult This class manages results from fastqscreen.FastqScreenSAMParser This class ensures alignment fastqScreen treating the output format BAM of mapper.GenomeAliases This class define a storage for genome name aliases.