| Package | Description |
|---|---|
| fr.ens.biologie.genomique.aozan |
Root package of Aozan.
|
| fr.ens.biologie.genomique.aozan.aozan3 | |
| fr.ens.biologie.genomique.aozan.aozan3.action | |
| fr.ens.biologie.genomique.aozan.aozan3.dataprocessor | |
| fr.ens.biologie.genomique.aozan.aozan3.dataprovider | |
| fr.ens.biologie.genomique.aozan.aozan3.datatypefilter | |
| fr.ens.biologie.genomique.aozan.aozan3.legacy | |
| fr.ens.biologie.genomique.aozan.aozan3.log | |
| fr.ens.biologie.genomique.aozan.aozan3.nanopore | |
| fr.ens.biologie.genomique.aozan.aozan3.recipe | |
| fr.ens.biologie.genomique.aozan.aozan3.runconfigurationprovider | |
| fr.ens.biologie.genomique.aozan.aozan3.samplesheetconverter | |
| fr.ens.biologie.genomique.aozan.aozan3.util | |
| fr.ens.biologie.genomique.aozan.collectors |
This package defines the collectors which collects data for a run.
|
| fr.ens.biologie.genomique.aozan.collectors.interop |
This package defines the collectors which collects data from InterOp binary
files for a run.
|
| fr.ens.biologie.genomique.aozan.collectors.stats |
This package defines the statistics collectors which collects data for a run.
|
| fr.ens.biologie.genomique.aozan.demux |
This package allows to re-demultiplexing selected project sequencing.
|
| fr.ens.biologie.genomique.aozan.fastqc |
This package contains a QCModule for FastQC that list the bad tiles in a
fastq file and class used for modify fastqc bytecode, it is necessary with
FastQC version 0.10.1.
|
| fr.ens.biologie.genomique.aozan.fastqscreen |
This package contains a module fastqscreen for the contamination detection in
each sample of a run.
|
| fr.ens.biologie.genomique.aozan.illumina |
This package contains classes to handle files generated and used by Illumina
software.
|
| fr.ens.biologie.genomique.aozan.io |
This package contains general I/O classes for Aozan.
|
| fr.ens.biologie.genomique.aozan.tests |
This package contains class of tests which defines the collector to launch
and creates a report of a quality control.
|
| fr.ens.biologie.genomique.aozan.tests.global |
This package contains class of global tests which defines the collector to
launch and creates a report of a quality control.
|
| fr.ens.biologie.genomique.aozan.tests.lane |
This package contains class of lane tests which defines the collector to
launch and creates a report of a quality control.
|
| fr.ens.biologie.genomique.aozan.tests.pooledsample |
This package contains class of project tests which defines the collector to
launch and creates a report of a quality control.
|
| fr.ens.biologie.genomique.aozan.tests.project |
This package contains class of project tests which defines the collector to
launch and creates a report of a quality control.
|
| fr.ens.biologie.genomique.aozan.tests.sample |
This package contains class of sample tests which defines the collector to
launch and creates a report of a quality control.
|
| fr.ens.biologie.genomique.aozan.util |
This package utility classes.
|