Package fr.ens.biologie.genomique.aozan.tests.project
This package contains class of project tests which defines the collector to
launch and creates a report of a quality control.
- Since:
- 1.4
-
Interface Summary Interface Description ProjectTest This interface define a test on lane. -
Class Summary Class Description AbstractProjectTest This class define a abstract Global test.AbstractSimpleProjectTest This class define a simple lane test.FastQScreenReportProjectTest FastQScreenSampleOvercontaminationCountProjectTest The class define test on samples count on a project which exceed a contaminant threshold on percent mapped reads on dataset contaminants genomes.GenomeNamesProjectTest The Class GenomesProjectTest.IsIndexedProjectTest The Class IsIndexedProjectTest.LaneCountProjectTest The Class LanesRunProjectTest.MaxPFClusterCountProjectTest The class define a test the maximum on passing filter clusters on samples in a project.MaxRawClusterCountProjectTest The class define a test the maximum on raw clusters on samples in a project.MinPFClusterCountProjectTest The class define a test the minimum on passing filter clusters on samples in a project.MinRawClusterCountProjectTest The class define a test the minimum on raw clusters on samples in a project.MultiQCReportProjectTest This class define a test that allow access to the MultiQC report of a project.PFClusterCountProjectTest The class define a test the sum on passing filter clusters on samples in a project.RawClusterCountProjectTest The class define a test the sum on raw clusters on samples in a project.RecoverablePFClusterPercentProjectTest The class define test to compute the percent recoverable passing filter clusters for a project.RecoverableRawClusterPercentProjectTest The class define test to compute the percent recoverable raw clusters for a project.SampleCountProjectTest The Class SampleCountProjectTest.