Package fr.ens.biologie.genomique.aozan.io

Class FastqSampleUtils

java.lang.Object

fr.ens.biologie.genomique.aozan.io.FastqSampleUtils

public class FastqSampleUtils
extends Object

Method Summary

Modifier and Type	Method	Description
static Set<FastqSample>	createListFastqSamples2(QC qc, RunData data, boolean processStandardSamples, boolean processUndeterminedSamples, boolean processOnlyFirstRead)	Create a set of FastqSample to process.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

createListFastqSamples2

public static Set<FastqSample> createListFastqSamples2(QC qc,
                                                       RunData data,
                                                       boolean processStandardSamples,
                                                       boolean processUndeterminedSamples,
                                                       boolean processOnlyFirstRead)
                                                throws IOException

Create a set of FastqSample to process.

Parameters:

qc - the QC object

data - the RunData object

processStandardSamples - true if standard samples must be processed

processUndeterminedSamples - true if undetermined samples must be processed

processOnlyFirstRead - true if only the first read must be processed

Returns:

a set of of FastqSample to process

Throws:

IOException - if an error occurs while creating a FastqSample