Package fr.ens.biologie.genomique.eoulsan.core.workflow

This package contains Eoulsan workflow dedicated classes.

Since:

2.0

Author:

Laurent Jourdren

Interface Summary

Interface	Description
EmergencyStopTask	This interface define a task that will executed if the execution of the workflow fail.
StepObserver	This interface define workflow step events

Class Summary

Class	Description
AbstractStep	This class define a step of the workflow.
AbstractWorkflow	This class define a Workflow.
CommandStep	This class define a step based on a Command object (workflow file).
CommandWorkflow	This class define a workflow based on a Command object (workflow file).
CommandWorkflowModel	This class define the workflow model object of Eoulsan.
CommandWorkflowParser	This class allow parse the workflow file.
CommandWorkflowParser.StepOutputPort
DataList	This class define a data list.
DataMetadataStorage	This class define a storage for data metadata of all files generated by the workflow.
EmergencyStopTasks	This class define a class where the emergency tasks are stored
Executor	This class is the executor for running all the steps of an analysis.
ExecutorArguments	This class contains arguments for the Executor.
ModuleRegistry	This class define a registry for modules.
ModuleService	This class allow to get a Step object from a class in the classpath.
SerializableStopwatch
StepConfigurationContextImpl	This class define a concrete implementation of the configuration context of a step.
StepInstances	This class store module instances and avoid storing this instance in Step objects that are serialized.
StepObserverRegistry	This class allow to relay workflow step events to other observers.
StepOutputDataFile	This class define an output file of workflow set.
StepResult	This class define a step result.
StepStateDependencies	This class allow to store the step state and its dependencies.
StepStatus	This class define a step status.
TaskContextImpl	This class define a task context.
TaskResultImpl	This class define a result for a task context.
TaskRunner	This class allow to run a task context.
TaskSerializationUtils	This class contains utility methods for serialization, deserialization and execution of Task objects.
TaskStatusImpl	This class define a task status.
TokenManager	This class define a token manager for a step.
TokenManagerRegistry	This class store all the TokenManager instances.
UIEvent	This class define an abstract UIEvent
UIStepEvent	This class define a UI step event.
UITaskEvent	This class define a UI task event.
UIWorkflowEvent	This class define a UI workflow event.
UnmodifiableData	This class define an unmodifiable data
Workflow2Graphviz	Convert a Workflow to Graphviz
WorkflowContext	This class define the context implementation.
WorkflowDataUtils	This class define an utility on data object.
WorkflowEventBus	This class define a single for the event bus.
WorkflowFileNaming	This class contains methods to create workflow data file names.