Package fr.ens.biologie.genomique.eoulsan.modules.diffana

Enum DESeq2.SizeFactorsType

java.lang.Object

java.lang.Enum<DESeq2.SizeFactorsType>

fr.ens.biologie.genomique.eoulsan.modules.diffana.DESeq2.SizeFactorsType

All Implemented Interfaces:

Serializable, Comparable<DESeq2.SizeFactorsType>

Enclosing class:

DESeq2

public static enum DESeq2.SizeFactorsType
extends Enum<DESeq2.SizeFactorsType>

Enum for the sizeFactorsType option in DESeq2 related to the estimation of the size factor.

Enum Constant Summary

Enum Constants

Enum Constant	Description
ITERATE
RATIO

Method Summary

Modifier and Type	Method	Description
static DESeq2.SizeFactorsType	get(Parameter parameter)	Get the size factors type to be used in DESeq2.
String	toDESeq2Value()	Convert the enum name into DESeq2 value.
static DESeq2.SizeFactorsType	valueOf(String name)	Returns the enum constant of this type with the specified name.
static DESeq2.SizeFactorsType[]	values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

RATIO

public static final DESeq2.SizeFactorsType RATIO

ITERATE

public static final DESeq2.SizeFactorsType ITERATE

Method Detail

values

public static DESeq2.SizeFactorsType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (DESeq2.SizeFactorsType c : DESeq2.SizeFactorsType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static DESeq2.SizeFactorsType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

get

public static DESeq2.SizeFactorsType get(Parameter parameter)
                                  throws EoulsanException

Get the size factors type to be used in DESeq2.

Parameters:

parameter - Eoulsan parameter

Returns:

the size factors type value

Throws:

EoulsanException - if the size factors type value is different from ratio or iterate

toDESeq2Value

public String toDESeq2Value()

Convert the enum name into DESeq2 value.

Returns:

DESeq2 value