Package fr.ens.biologie.genomique.eoulsan.modules.fastqc

Interface CounterSequenceFile

  • All Superinterfaces:
    uk.ac.babraham.FastQC.Sequence.SequenceFile
    All Known Implementing Classes:
    FastqSequenceFile, SAMSequenceFile
    public interface CounterSequenceFile
extends uk.ac.babraham.FastQC.Sequence.SequenceFile
    This interface extends SequenceFile to add a getCount() method that allow to get the count of the read entries.
    Since:
    2.0
    Author:
    Laurent Jourdren

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      long getCount()
      Get the count of the read entries.

      • Methods inherited from interface uk.ac.babraham.FastQC.Sequence.SequenceFile

        getFile, getPercentComplete, hasNext, isColorspace, name, next

    • Method Detail

      • getCount

        long getCount()
        Get the count of the read entries.
        Returns:
        the count of the read entries