Package fr.ens.biologie.genomique.eoulsan.modules.fastqc

This package contain all the classes related to FastQC.

Since:

2.0

Interface Summary

Interface	Description
CounterSequenceFile	This interface extends SequenceFile to add a getCount() method that allow to get the count of the read entries.

Class Summary

Class	Description
EmptyFileQC	Empty file FastQC module.
FastQCModule	This class define a module that compute QC report using FastQC.
FastQCRuntimePatcher	This class to patch FastQC to be compatible with Hadoop.
FastqSequenceFile	This class define a SequenceFile for FASTQ files.
SAMSequenceFile	This class define a SequenceFile for SAM files.