Package fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop

Class PairedEndFastqToTfq.FastqPairedEndReducer

java.lang.Object

org.apache.hadoop.mapreduce.Reducer<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text,org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>

fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop.PairedEndFastqToTfq.FastqPairedEndReducer

Enclosing class:

PairedEndFastqToTfq

public static final class PairedEndFastqToTfq.FastqPairedEndReducer
extends org.apache.hadoop.mapreduce.Reducer<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text,org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>

This class define the reducer required to convert FASTQ files into TFQ file.

Since:

2.0

Author:

Laurent Jourdren

Nested Class Summary

Nested classes/interfaces inherited from class org.apache.hadoop.mapreduce.Reducer

org.apache.hadoop.mapreduce.Reducer.Context

Constructor Summary

Constructors

Constructor	Description
FastqPairedEndReducer()

Method Summary

Modifier and Type	Method	Description
protected void	reduce(org.apache.hadoop.io.Text key, Iterable<org.apache.hadoop.io.Text> values, org.apache.hadoop.mapreduce.Reducer.Context context)

Methods inherited from class org.apache.hadoop.mapreduce.Reducer

cleanup, run, setup

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastqPairedEndReducer

public FastqPairedEndReducer()

Method Detail

reduce

protected void reduce(org.apache.hadoop.io.Text key,
                      Iterable<org.apache.hadoop.io.Text> values,
                      org.apache.hadoop.mapreduce.Reducer.Context context)
               throws IOException,
                      InterruptedException

Overrides:

reduce in class org.apache.hadoop.mapreduce.Reducer<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text,org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>

Throws:

IOException

InterruptedException