Uses of Annotation Interface
fr.ens.biologie.genomique.eoulsan.annotations.HadoopOnly

Packages that use HadoopOnly

Package	Description
fr.ens.biologie.genomique.eoulsan.data.protocols	This package contains class for protocols used by the DataFile classes.
fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop	This package contain all the classes related to the expression step in hadoop mode.
fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop	This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step in hadoop mode.
fr.ens.biologie.genomique.eoulsan.modules.mgmt.hadoop	This package contain classes related data management in Hadoop mode.
fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload	This package contain classes related to upload data to HDFS and Cloud.

Uses of HadoopOnly in fr.ens.biologie.genomique.eoulsan.data.protocols

Classes in fr.ens.biologie.genomique.eoulsan.data.protocols with annotations of type HadoopOnly

Modifier and Type	Class	Description
class	FTPPathDataProtocol	This class define the FTP protocol in Hadoop mode.
class	HDFSPathDataProtocol	This class define the HDFS protocol in Hadoop mode.
class	HTTPPathDataProtocol	This class define the HTTP protocol in Hadoop mode.
class	HTTPSPathDataProtocol	This class define the HTTP protocol in Hadoop mode.

Uses of HadoopOnly in fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop

Classes in fr.ens.biologie.genomique.eoulsan.modules.expression.hadoop with annotations of type HadoopOnly

Modifier and Type	Class	Description
class	ExpressionHadoopModule	This class is the main class for the expression program of the reads in hadoop mode.

Uses of HadoopOnly in fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop

Classes in fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop with annotations of type HadoopOnly

Modifier and Type	Class	Description
class	FilterAndMapReadsHadoopModule	This class define a Step that filter and map read in Hadoop mode.
class	ReadsFilterHadoopModule	This class is the main class for the filter reads program in hadoop mode.
class	ReadsMapperHadoopModule	This class define an mapper module in Hadoop mode.
class	SAM2BAMHadoopModule	This class define a module for converting SAM files into BAM.
class	SAMFilterHadoopModule	This class define a filter alignment step in Hadoop mode.

Uses of HadoopOnly in fr.ens.biologie.genomique.eoulsan.modules.mgmt.hadoop

Classes in fr.ens.biologie.genomique.eoulsan.modules.mgmt.hadoop with annotations of type HadoopOnly

Modifier and Type	Class	Description
class	CopyDesignAndWorkflowFilesToOutputModule	This module copy design and workflow file to output directory.

Uses of HadoopOnly in fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload

Classes in fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload with annotations of type HadoopOnly

Modifier and Type	Class	Description
class	HadoopUploadModule	This class define a module for Hadoop file uploading.
class	HDFSDataDownloadModule	This class define a download module that retrieve data from HDFS at the end of an analysis.