Package fr.ens.biologie.genomique.eoulsan.bio.io.hadoop

Class SAMOutputFormat

java.lang.Object
org.apache.hadoop.mapreduce.OutputFormat<K,V>
org.apache.hadoop.mapreduce.lib.output.FileOutputFormat<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>
fr.ens.biologie.genomique.eoulsan.bio.io.hadoop.SAMOutputFormat
public class SAMOutputFormat extends org.apache.hadoop.mapreduce.lib.output.FileOutputFormat<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>
This class define a SAM output format.
Since:
2.0
Author:
Laurent Jourdren

  • Nested Class Summary

    Nested classes/interfaces inherited from class org.apache.hadoop.mapreduce.lib.output.FileOutputFormat

    org.apache.hadoop.mapreduce.lib.output.FileOutputFormat.Counter

  • Field Summary

    Fields inherited from class org.apache.hadoop.mapreduce.lib.output.FileOutputFormat

    COMPRESS, COMPRESS_CODEC, COMPRESS_TYPE, OUTDIR

  • Constructor Summary

    Constructors
    Constructor
    Description
    SAMOutputFormat()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    org.apache.hadoop.mapreduce.RecordWriter<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>
    getRecordWriter(org.apache.hadoop.mapreduce.TaskAttemptContext context)
     

    Methods inherited from class org.apache.hadoop.mapreduce.lib.output.FileOutputFormat

    checkOutputSpecs, getCompressOutput, getDefaultWorkFile, getOutputCommitter, getOutputCompressorClass, getOutputPath, getPathForWorkFile, getUniqueFile, getWorkOutputPath, setCompressOutput, setOutputCompressorClass, setOutputPath

    Methods inherited from class java.lang.Object

    equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • SAMOutputFormat

      public SAMOutputFormat()

  • Method Details

    • getRecordWriter

      public org.apache.hadoop.mapreduce.RecordWriter<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text> getRecordWriter(org.apache.hadoop.mapreduce.TaskAttemptContext context) throws IOException, InterruptedException
      Specified by:
      getRecordWriter in class org.apache.hadoop.mapreduce.lib.output.FileOutputFormat<org.apache.hadoop.io.Text,org.apache.hadoop.io.Text>
      Throws:
      IOException
      InterruptedException