Package fr.ens.biologie.genomique.eoulsan.bio.io.hadoop

package fr.ens.biologie.genomique.eoulsan.bio.io.hadoop

This package contains I/O classes for reading objects of the fr.ens.biologie.genomique.eoulsan.bio.alignmentsfilters package from Hadoop.

Since:

1.0

Classes

Class	Description
CompressedSplitFastqLineReader	This class define a split line reader for compressed FASTQ files.
Counters	This class define the counters names used in this package.
ExpressionOutputFormat	This class define a expression output format.
ExpressionRecordWriter	This class define a RecordWriter for expression files.
FastqInputFormat	This class define an InputFormat for FASTQ files for the Hadoop MapReduce framework.
FastqLineRecordReader	Treats keys as offset in file and value as line.
FastqOutputFormat	This class define a FASTQ output format.
FastqRecordReader	This class define a RecordReader for FASTQ files for the Hadoop MapReduce framework.
FastqRecordWriter	This class define a RecordWriter for FASTQ files.
SAMInputFormat	This class define an InputFormat for SAM files for the Hadoop MapReduce framework.
SAMOutputFormat	This class define a SAM output format.
SAMRecordReader	This class define a RecordReader for SAM files for the Hadoop MapReduce framework.
SAMRecordWriter	This class define a RecordWriter for SAM files.