Uses of Class
fr.ens.biologie.genomique.eoulsan.Settings

Packages that use Settings

Package	Description
fr.ens.biologie.genomique.eoulsan	Root package of Eoulsan.
fr.ens.biologie.genomique.eoulsan.actions	This package contains all the commands (actions) available through the Eoulsan command line.
fr.ens.biologie.genomique.eoulsan.core	This package contains Eoulsan workflow core class.
fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters	This package contains classes for cluster schedulers.
fr.ens.biologie.genomique.eoulsan.core.workflow	This package contains Eoulsan workflow dedicated classes.
fr.ens.biologie.genomique.eoulsan.util	This package contain utility classes.

Uses of Settings in fr.ens.biologie.genomique.eoulsan

Methods in fr.ens.biologie.genomique.eoulsan that return Settings

Modifier and Type	Method	Description
Settings	AbstractEoulsanRuntime.getSettings()	Get Settings.
static Settings	EoulsanRuntime.getSettings()	Get instance settings.

Methods in fr.ens.biologie.genomique.eoulsan with parameters of type Settings

Modifier and Type	Method	Description
static List<Infos.Info>	Infos.cloudInfo(Settings settings)	Return a list with cloud configuration informations.
static List<Infos.Info>	Infos.clusterInfo(Settings settings)	Return a list with cluster configuration informations.
static org.apache.hadoop.conf.Configuration	CommonHadoop.createConfiguration(Settings settings)	Create a new Configuration object from settings.
static List<Infos.Info>	Infos.dockerInfo(Settings settings)	Return a list with Docker configuration informations.
static List<Infos.Info>	Infos.generalConf(Settings settings)	Return a list with general configuration informations.
static List<Infos.Info>	Infos.hadoopInfo(Settings settings)	Return a list with Hadoop configuration informations.
protected abstract void	Main.initializeRuntime(Settings settings)	Initialize the Eoulsan runtime.
protected void	MainCLI.initializeRuntime(Settings settings)
protected void	MainHadoop.initializeRuntime(Settings settings)
static List<Infos.Info>	Infos.mailInfo(Settings settings)	Return a list with email configuration informations.
static List<Infos.Info>	Infos.modulesAndFormatsInfo(Settings settings)	Return a list with modules and format informations.
static LocalEoulsanRuntime	LocalEoulsanRuntime.newEoulsanRuntime(Settings settings)	Public constructor, initialize the runtime.
static List<Infos.Info>	Infos.partitionInfo(Settings settings)	Return a list with Docker configuration informations.
static List<Infos.Info>	Infos.rAndRserveInfo(Settings settings)	Return a list with R and Rserve configuration informations.
void	Settings.setSettings(Settings settings)	Set the values of the settings with another Settings object.
static List<Infos.Info>	Infos.storageInfo(Settings settings)	Return a list with storage informations.

Constructors in fr.ens.biologie.genomique.eoulsan with parameters of type Settings

Constructor	Description
AbstractEoulsanRuntime(Settings settings)

Uses of Settings in fr.ens.biologie.genomique.eoulsan.actions

Methods in fr.ens.biologie.genomique.eoulsan.actions with parameters of type Settings

Modifier and Type	Method	Description
protected abstract void	AbstractInfoAction.showInfo(Settings settings)	Show the information on stdout
protected void	FormatsAction.showInfo(Settings settings)
protected void	InfoAction.showInfo(Settings settings)	Show the information on stdout
protected void	ModulesAction.showInfo(Settings settings)

Uses of Settings in fr.ens.biologie.genomique.eoulsan.core

Methods in fr.ens.biologie.genomique.eoulsan.core that return Settings

Modifier and Type	Method	Description
Settings	StepConfigurationContext.getSettings()	Get Eoulsan settings.

Uses of Settings in fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters

Methods in fr.ens.biologie.genomique.eoulsan.core.schedulers.clusters with parameters of type Settings

Modifier and Type	Method	Description
void	BpipeTaskScheduler.configure(Settings settings)
void	ClusterTaskScheduler.configure(Settings settings)	Configure the scheduler.

Uses of Settings in fr.ens.biologie.genomique.eoulsan.core.workflow

Methods in fr.ens.biologie.genomique.eoulsan.core.workflow that return Settings

Modifier and Type	Method	Description
Settings	StepConfigurationContextImpl.getSettings()
Settings	TaskContextImpl.getSettings()
Settings	WorkflowContext.getSettings()	Get Eoulsan settings.

Uses of Settings in fr.ens.biologie.genomique.eoulsan.util

Methods in fr.ens.biologie.genomique.eoulsan.util with parameters of type Settings

Modifier and Type	Method	Description
static DataFile	EoulsanTranslatorUtils.getLinksFileFromSettings(Settings settings)	Get the links file from the settings.