Uses of Package
fr.ens.biologie.genomique.eoulsan.data

Packages that use fr.ens.biologie.genomique.eoulsan.data

Package	Description
fr.ens.biologie.genomique.eoulsan.checkers	This package contains and define checkers of DataFormat.
fr.ens.biologie.genomique.eoulsan.core	This package contains Eoulsan workflow core class.
fr.ens.biologie.genomique.eoulsan.core.workflow	This package contains Eoulsan workflow dedicated classes.
fr.ens.biologie.genomique.eoulsan.data	This package contains classes for data files, data types and data formats.
fr.ens.biologie.genomique.eoulsan.data.protocols	This package contains class for protocols used by the DataFile classes.
fr.ens.biologie.genomique.eoulsan.data.storages	This package contains and define data storages.
fr.ens.biologie.genomique.eoulsan.design	This package contains classes to handle experimental designs.
fr.ens.biologie.genomique.eoulsan.design.io	This package contains I/O classes to read and write design files.
fr.ens.biologie.genomique.eoulsan.galaxytools.elements	This package contain classes related to parameter extractions from XML Galaxy tool xml files.
fr.ens.biologie.genomique.eoulsan.modules	This package define the steps for the Eoulsan workflow.
fr.ens.biologie.genomique.eoulsan.modules.chipseq	This packages contains the ChIP-Seq modules.
fr.ens.biologie.genomique.eoulsan.modules.diffana	This package contain all the classes related to the differential analysis step.
fr.ens.biologie.genomique.eoulsan.modules.expression	This package contain all the classes related to the expression step.
fr.ens.biologie.genomique.eoulsan.modules.fastqc	This package contain all the classes related to FastQC.
fr.ens.biologie.genomique.eoulsan.modules.generators	This package contain generator steps.
fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop	This package contain all the classes related to the mapping (reads filtering, mapping and alignments filtering) step in hadoop mode.
fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload	This package contain classes related to upload data to HDFS and Cloud.
fr.ens.biologie.genomique.eoulsan.modules.multiqc
fr.ens.biologie.genomique.eoulsan.splitermergers	This package contains splitter and merger used when running Eoulsan on a standard cluster to get more parallelization efficiency.
fr.ens.biologie.genomique.eoulsan.util	This package contain utility classes.
fr.ens.biologie.genomique.eoulsan.util.r	This package contain utility classes for R usage.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.checkers

Class	Description
Data	This interface define data used by ports.
DataFormat	This interface define a DataFormat.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.core

Class	Description
Data	This interface define data used by ports.
DataFile	This class define a DataFile.
DataFormat	This interface define a DataFormat.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.core.workflow

Class	Description
Data	This interface define data used by ports.
DataFile	This class define a DataFile.
DataFormat	This interface define a DataFormat.
DataMetadata	This interface define metadata of data objects.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.data

Class	Description
Data	This interface define data used by ports.
DataFile	This class define a DataFile.
DataFileMetadata	This class define source metadata
DataFormat	This interface define a DataFormat.
DataFormatRegistry	this class register DataFormat to allow get the DataFormat of a file from its filename.
DataMetadata	This interface define metadata of data objects.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.data.protocols

Class	Description
DataFile	This class define a DataFile.
DataFileMetadata	This class define source metadata

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.data.storages

Class	Description
DataFile	This class define a DataFile.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.design

Class	Description
DataFile	This class define a DataFile.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.design.io

Class	Description
DataFile	This class define a DataFile.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.galaxytools.elements

Class	Description
DataFormat	This interface define a DataFormat.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules

Class	Description
DataFormat	This interface define a DataFormat.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.chipseq

Class	Description
DataFormat	This interface define a DataFormat.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.diffana

Class	Description
Data	This interface define data used by ports.
DataFile	This class define a DataFile.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.expression

Class	Description
DataFile	This class define a DataFile.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.fastqc

Class	Description
DataFile	This class define a DataFile.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.generators

Class	Description
DataFile	This class define a DataFile.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.mapping.hadoop

Class	Description
DataFile	This class define a DataFile.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.mgmt.upload

Class	Description
DataFile	This class define a DataFile.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.modules.multiqc

Class	Description
Data	This interface define data used by ports.
DataFormat	This interface define a DataFormat.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.splitermergers

Class	Description
DataFile	This class define a DataFile.
DataFormat	This interface define a DataFormat.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.util

Class	Description
DataFile	This class define a DataFile.

Classes in fr.ens.biologie.genomique.eoulsan.data used by fr.ens.biologie.genomique.eoulsan.util.r

Class	Description
DataFile	This class define a DataFile.