Package fr.ens.biologie.genomique.eoulsan.modules.chipseq

package fr.ens.biologie.genomique.eoulsan.modules.chipseq

This packages contains the ChIP-Seq modules.

Since:

2.0

Author:

Celine Hernandez - CSB lab - ENS - Paris

Related Packages

Package	Description
fr.ens.biologie.genomique.eoulsan.modules	This package define the steps for the Eoulsan workflow.
fr.ens.biologie.genomique.eoulsan.modules.chipseq.peakcalling	This packages contains the peak-calling modules.
fr.ens.biologie.genomique.eoulsan.modules.chipseq.qc	This packages contains all the quality check modules for ChIP-Seq.

Classes

Class	Description
ChIPSeqDataFormats	This class contains the definition of some DataFormats for ChiP-Seq.
MergeInputRepLocalModule	This class merges SAM files of input of the same experiment.
RmDupLocalModule	This class removes PCR duplicates from a SAM file.
TrackHubModule	This class construct TrackHub for genome browser visualization.