Package fr.ens.biologie.genomique.eoulsan.modules.chipseq.peakcalling

package fr.ens.biologie.genomique.eoulsan.modules.chipseq.peakcalling

This packages contains the peak-calling modules.

Since:

2.0

Author:

Celine Hernandez - CSB lab - ENS - Paris

Related Packages

Package	Description
fr.ens.biologie.genomique.eoulsan.modules.chipseq	This packages contains the ChIP-Seq modules.
fr.ens.biologie.genomique.eoulsan.modules.chipseq.qc	This packages contains all the quality check modules for ChIP-Seq.

Classes

Class	Description
BedToolsModule	This class uses tools from the BEDTools suite.
DeepToolsModule	This class uses tools from the DeepTools suite.
MACS2Module	This class defines the macs2 peak-calling step.
MergePeaksModule	This class defines the peak merging step.