Package fr.ens.biologie.genomique.eoulsan.design

Interface Design

  • public interface Design
    This interface defines the design.
    Since:
    2.0
    Author:
    Xavier Bauquet

    • Method Detail

      • setName

        void setName​(String newDesignName)
        Set the design name.
        Parameters:
        newDesignName - the new design name

      • getSample

        Sample getSample​(String sampleId)
        Get the name of a sample.
        Parameters:
        sampleId - the sample id
        Returns:
        a sample object

      • getSamples

        List<Sample> getSamples()
        Get the list of the samples.
        Returns:
        the list of the samples

      • getExperiment

        Experiment getExperiment​(String experimentId)
        Get the name of an experiment.
        Parameters:
        experimentId - the experiment id
        Returns:
        an experiment object

      • getExperiments

        List<Experiment> getExperiments()
        Get the list of the experiments.
        Returns:
        the list of the experiments

      • getMetadata

        DesignMetadata getMetadata()
        Get the design Metadata.
        Returns:
        a designMetadata object

      • getNumber

        int getNumber()
        Get design number.
        Returns:
        the design number

      • getName

        String getName()
        Get design name.
        Returns:
        the design name

      • removeSample

        void removeSample​(String sampleId)
        Remove the sample.
        Parameters:
        sampleId - the sample id

      • removeExperiment

        void removeExperiment​(String experimentId)
        Remove the experiment.
        Parameters:
        experimentId - the experiment id

      • containsSample

        boolean containsSample​(String sampleId)
        Test if the sample exists.
        Parameters:
        sampleId - the sample id
        Returns:
        true if the sample exists

      • containsExperiment

        boolean containsExperiment​(String experimentId)
        Test if the experiment exists.
        Parameters:
        experimentId - the experiment id
        Returns:
        true if the experiment exists

      • containsSampleName

        boolean containsSampleName​(String sampleName)

      • containsExperimentName

        boolean containsExperimentName​(String experimentName)

      • addSample

        fr.ens.biologie.genomique.eoulsan.design.SampleImpl addSample​(String sampleId)
        Add a sample.
        Parameters:
        sampleId - the sample id
        Returns:
        the sample object

      • addExperiment

        Experiment addExperiment​(String experimentId)
        Add an experiment.
        Parameters:
        experimentId - the experiment id
        Returns:
        the experiment object

      • getExperimentsUsingASample

        List<Experiment> getExperimentsUsingASample​(Sample sampleId)
        Get all the experiments related to a sample.
        Parameters:
        sampleId - the sample
        Returns:
        a list with the experiments that use the sample