Package fr.ens.biologie.genomique.eoulsan.design

Interface Design

public interface Design
This interface defines the design.
Since:
2.0
Author:
Xavier Bauquet

  • Method Details

    • setName

      void setName(String newDesignName)
      Set the design name.
      Parameters:
      newDesignName - the new design name

    • getSample

      Sample getSample(String sampleId)
      Get the name of a sample.
      Parameters:
      sampleId - the sample id
      Returns:
      a sample object

    • getSamples

      List<Sample> getSamples()
      Get the list of the samples.
      Returns:
      the list of the samples

    • getExperiment

      Experiment getExperiment(String experimentId)
      Get the name of an experiment.
      Parameters:
      experimentId - the experiment id
      Returns:
      an experiment object

    • getExperiments

      List<Experiment> getExperiments()
      Get the list of the experiments.
      Returns:
      the list of the experiments

    • getMetadata

      DesignMetadata getMetadata()
      Get the design Metadata.
      Returns:
      a designMetadata object

    • getNumber

      int getNumber()
      Get design number.
      Returns:
      the design number

    • getName

      String getName()
      Get design name.
      Returns:
      the design name

    • removeSample

      void removeSample(String sampleId)
      Remove the sample.
      Parameters:
      sampleId - the sample id

    • removeExperiment

      void removeExperiment(String experimentId)
      Remove the experiment.
      Parameters:
      experimentId - the experiment id

    • containsSample

      boolean containsSample(String sampleId)
      Test if the sample exists.
      Parameters:
      sampleId - the sample id
      Returns:
      true if the sample exists

    • containsExperiment

      boolean containsExperiment(String experimentId)
      Test if the experiment exists.
      Parameters:
      experimentId - the experiment id
      Returns:
      true if the experiment exists

    • containsSampleName

      boolean containsSampleName(String sampleName)
      Test if the sample name exists.
      Parameters:
      sampleName - the sample name
      Returns:
      true if the sample exists

    • containsExperimentName

      boolean containsExperimentName(String experimentName)
      Test if the experiment exists.
      Parameters:
      experimentName - the experiment name
      Returns:
      true if the experiment exists

    • addSample

      fr.ens.biologie.genomique.eoulsan.design.SampleImpl addSample(String sampleId)
      Add a sample.
      Parameters:
      sampleId - the sample id
      Returns:
      the sample object

    • addExperiment

      Experiment addExperiment(String experimentId)
      Add an experiment.
      Parameters:
      experimentId - the experiment id
      Returns:
      the experiment object

    • getExperimentsUsingASample

      List<Experiment> getExperimentsUsingASample(Sample sampleId)
      Get all the experiments related to a sample.
      Parameters:
      sampleId - the sample
      Returns:
      a list with the experiments that use the sample