Package fr.ens.biologie.genomique.eoulsan.design.io

Class Eoulsan1DesignReader

java.lang.Object

fr.ens.biologie.genomique.eoulsan.design.io.Eoulsan1DesignReader

All Implemented Interfaces:

DesignReader

public class Eoulsan1DesignReader
extends Object
implements DesignReader

This class define a design reader for limma design files.

Since:

1.0

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
Eoulsan1DesignReader(DataFile file)	Public constructor.
Eoulsan1DesignReader(File file)	Public constructor.
Eoulsan1DesignReader(InputStream is)	Public constructor.
Eoulsan1DesignReader(String filename)	Public constructor.

Method Summary

Modifier and Type	Method	Description
Design	read()	Read the design.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Eoulsan1DesignReader

public Eoulsan1DesignReader(File file)
                     throws FileNotFoundException

Public constructor.

Parameters:

file - file to read

Throws:

FileNotFoundException - if the file cannot be found

Eoulsan1DesignReader

public Eoulsan1DesignReader(InputStream is)
                     throws IOException

Public constructor.

Parameters:

is - Input stream to read

Throws:

IOException - if an error occurs while opening the file

Eoulsan1DesignReader

public Eoulsan1DesignReader(DataFile file)
                     throws IOException

Public constructor.

Parameters:

file - file to read

Throws:

IOException - if an error occurs while opening the file

Eoulsan1DesignReader

public Eoulsan1DesignReader(String filename)
                     throws FileNotFoundException

Public constructor.

Parameters:

filename - File to read

Throws:

FileNotFoundException - if the file doesn't exist

Method Detail

read

public Design read()
            throws IOException

Description copied from interface: DesignReader

Read the design.

Specified by:

read in interface DesignReader

Returns:

a new Design object

Throws:

IOException - if an error occurs while reading the design