Enum DESeq2.FitType
- java.lang.Object
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- java.lang.Enum<DESeq2.FitType>
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- fr.ens.biologie.genomique.eoulsan.modules.diffana.DESeq2.FitType
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- All Implemented Interfaces:
Serializable
,Comparable<DESeq2.FitType>
- Enclosing class:
- DESeq2
public static enum DESeq2.FitType extends Enum<DESeq2.FitType>
Enum for the fitType option in DESeq2 related to the dispersion estimation.
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Enum Constant Summary
Enum Constants Enum Constant Description LOCAL
MEAN
PARAMETRIC
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static DESeq2.FitType
get(String name)
Get the fit type to be used in DESeq2.String
toDESeq2Value()
Convert the enum name into DESeq2 value.static DESeq2.FitType
valueOf(String name)
Returns the enum constant of this type with the specified name.static DESeq2.FitType[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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PARAMETRIC
public static final DESeq2.FitType PARAMETRIC
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LOCAL
public static final DESeq2.FitType LOCAL
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MEAN
public static final DESeq2.FitType MEAN
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Method Detail
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values
public static DESeq2.FitType[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (DESeq2.FitType c : DESeq2.FitType.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static DESeq2.FitType valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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get
public static DESeq2.FitType get(String name) throws EoulsanException
Get the fit type to be used in DESeq2.- Parameters:
name
- name of the enum- Returns:
- the fit type value
- Throws:
EoulsanException
- if the fit type value is different from parametric, local or mean
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toDESeq2Value
public String toDESeq2Value()
Convert the enum name into DESeq2 value.- Returns:
- DESeq2 value
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