Package fr.ens.biologie.genomique.eoulsan.modules.diffana

Enum Class DESeq2Parameters.StatisticTest

java.lang.Object

java.lang.Enum<DESeq2Parameters.StatisticTest>

fr.ens.biologie.genomique.eoulsan.modules.diffana.DESeq2Parameters.StatisticTest

All Implemented Interfaces:

Serializable, Comparable<DESeq2Parameters.StatisticTest>, Constable

Enclosing class:

DESeq2Parameters

public static enum DESeq2Parameters.StatisticTest
extends Enum<DESeq2Parameters.StatisticTest>

Enum for the statisticTest option in DESeq2 related to the statistic test to be used during the differential expression analysis

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
LRT
WALD

Method Summary

Modifier and Type	Method	Description
static DESeq2Parameters.StatisticTest	get(String value)	Get the statistic test to be used in DESeq2.
String	toDESeq2Value()	Get the parameter value for DESeq2 argument.
static DESeq2Parameters.StatisticTest	valueOf(String name)	Returns the enum constant of this class with the specified name.
static DESeq2Parameters.StatisticTest[]	values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods inherited from class java.lang.Enum

compareTo, describeConstable, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

WALD

public static final DESeq2Parameters.StatisticTest WALD

LRT

public static final DESeq2Parameters.StatisticTest LRT

Method Details

values

public static DESeq2Parameters.StatisticTest[] values()

Returns an array containing the constants of this enum class, in the order they are declared.

Returns:

an array containing the constants of this enum class, in the order they are declared

valueOf

public static DESeq2Parameters.StatisticTest valueOf(String name)

Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum class has no constant with the specified name

NullPointerException - if the argument is null

toDESeq2Value

public String toDESeq2Value()

Get the parameter value for DESeq2 argument.

Returns:

a String with the DESeq2 argument

get

public static DESeq2Parameters.StatisticTest get(String value)
                                          throws EoulsanException

Get the statistic test to be used in DESeq2.

Parameters:

value - value to set

Returns:

the statistic test value

Throws:

EoulsanException - if the statistic test value is different from Wald or LRT