Enum Class ExpressionCounterCounter
java.lang.Object
java.lang.Enum<ExpressionCounterCounter>
fr.ens.biologie.genomique.eoulsan.modules.expression.ExpressionCounterCounter
- All Implemented Interfaces:
Serializable,Comparable<ExpressionCounterCounter>,Constable
This enum define counters for the expression step.
- Since:
- 1.0
- Author:
- Laurent Jourdren
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Nested Class Summary
Nested classes/interfaces inherited from class java.lang.Enum
Enum.EnumDesc<E extends Enum<E>> -
Enum Constant Summary
Enum ConstantsEnum ConstantDescription -
Method Summary
Modifier and TypeMethodDescriptionGet the name of the counter.static ExpressionCounterCountergetCounterFromEoulsanName(String counterName) Get an counter from its HTSeq-count namestatic ExpressionCounterCountergetCounterFromHTSeqCountName(String counterName) Get an counter from its HTSeq-count nameGet the HTSeq-count name of the counter.toString()static ExpressionCounterCounterReturns the enum constant of this class with the specified name.static ExpressionCounterCounter[]values()Returns an array containing the constants of this enum class, in the order they are declared.Methods inherited from class java.lang.Enum
compareTo, describeConstable, equals, getDeclaringClass, hashCode, name, ordinal, valueOf
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Enum Constant Details
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INVALID_SAM_ENTRIES_COUNTER
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TOTAL_READS_COUNTER
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UNUSED_READS_COUNTER
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USED_READS_COUNTER
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UNMAPPED_READS_COUNTER
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ELIMINATED_READS_COUNTER
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TOTAL_ALIGNMENTS_COUNTER
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NOT_ALIGNED_ALIGNMENTS_COUNTER
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NOT_UNIQUE_ALIGNMENTS_COUNTER
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LOW_QUAL_ALIGNMENTS_COUNTER
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EMPTY_ALIGNMENTS_COUNTER
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AMBIGUOUS_ALIGNMENTS_COUNTER
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MISSING_MATES_COUNTER
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PARENTS_COUNTER
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INVALID_CHROMOSOME_COUNTER
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PARENT_ID_NOT_FOUND_COUNTER
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Method Details
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values
Returns an array containing the constants of this enum class, in the order they are declared.- Returns:
- an array containing the constants of this enum class, in the order they are declared
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valueOf
Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)- Parameters:
name- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException- if this enum class has no constant with the specified nameNullPointerException- if the argument is null
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counterName
Get the name of the counter.- Returns:
- the name of the counter
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htSeqCountCounterName
Get the HTSeq-count name of the counter.- Returns:
- the HTSeq-count of the counter
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getCounterFromHTSeqCountName
Get an counter from its HTSeq-count name- Parameters:
counterName- the name of the counter to search- Returns:
- the counter if found or null
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getCounterFromEoulsanName
Get an counter from its HTSeq-count name- Parameters:
counterName- the name of the counter to search- Returns:
- the counter if found or null
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toString
- Overrides:
toStringin classEnum<ExpressionCounterCounter>
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