Package fr.ens.biologie.genomique.eoulsan.modules.mapping.local

Class Splice2BEDModule

java.lang.Object

fr.ens.biologie.genomique.eoulsan.modules.AbstractModule

fr.ens.biologie.genomique.eoulsan.modules.mapping.AbstractSplice2BEDModule

fr.ens.biologie.genomique.eoulsan.modules.mapping.local.Splice2BEDModule

All Implemented Interfaces:

Module

public class Splice2BEDModule
extends AbstractSplice2BEDModule

This class define a module for converting SAM files into BED.

Since:

2.3

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
Splice2BEDModule()

Method Summary

Modifier and Type	Method	Description
TaskResult	execute(TaskContext context, TaskStatus status)	Execute a task step.

Methods inherited from class fr.ens.biologie.genomique.eoulsan.modules.mapping.AbstractSplice2BEDModule

configure, getDescription, getInputPorts, getName, getOutputPorts, getVersion

Methods inherited from class fr.ens.biologie.genomique.eoulsan.modules.AbstractModule

getChecker, getParallelizationMode, getRequiredEoulsanVersion, getRequirements

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Splice2BEDModule

public Splice2BEDModule()

Method Details

execute

public TaskResult execute(TaskContext context,
 TaskStatus status)

Description copied from interface: Module

Execute a task step.

Parameters:

context - Execution context

status - of the task

Returns:

a TaskResult object