Uses of Interface
fr.ens.biologie.genomique.eoulsan.requirements.Requirement

Packages that use Requirement

Package	Description
fr.ens.biologie.genomique.eoulsan.core	This package contains Eoulsan workflow core class.
fr.ens.biologie.genomique.eoulsan.modules	This package define the steps for the Eoulsan workflow.
fr.ens.biologie.genomique.eoulsan.modules.chipseq.peakcalling	This packages contains the peak-calling modules.
fr.ens.biologie.genomique.eoulsan.modules.diffana	This package contain all the classes related to the differential analysis step.
fr.ens.biologie.genomique.eoulsan.modules.generators	This package contain generator steps.
fr.ens.biologie.genomique.eoulsan.modules.multiqc
fr.ens.biologie.genomique.eoulsan.modules.singlecell
fr.ens.biologie.genomique.eoulsan.requirements	This package contains requirement classes for Eoulsan.

Uses of Requirement in fr.ens.biologie.genomique.eoulsan.core

Methods in fr.ens.biologie.genomique.eoulsan.core that return types with arguments of type Requirement

Modifier and Type	Method	Description
Set<Requirement>	Module.getRequirements()	Get the requirements of the module.

Uses of Requirement in fr.ens.biologie.genomique.eoulsan.modules

Methods in fr.ens.biologie.genomique.eoulsan.modules that return types with arguments of type Requirement

Modifier and Type	Method	Description
Set<Requirement>	AbstractModule.getRequirements()
Set<Requirement>	GalaxyToolModule.getRequirements()

Uses of Requirement in fr.ens.biologie.genomique.eoulsan.modules.chipseq.peakcalling

Methods in fr.ens.biologie.genomique.eoulsan.modules.chipseq.peakcalling that return types with arguments of type Requirement

Modifier and Type	Method	Description
Set<Requirement>	BedToolsModule.getRequirements()
Set<Requirement>	DeepToolsModule.getRequirements()
Set<Requirement>	MACS2Module.getRequirements()

Uses of Requirement in fr.ens.biologie.genomique.eoulsan.modules.diffana

Methods in fr.ens.biologie.genomique.eoulsan.modules.diffana that return types with arguments of type Requirement

Modifier and Type	Method	Description
Set<Requirement>	DESeq2Module.getRequirements()
Set<Requirement>	DiffAnaModule.getRequirements()
Set<Requirement>	NormalizationModule.getRequirements()

Uses of Requirement in fr.ens.biologie.genomique.eoulsan.modules.generators

Methods in fr.ens.biologie.genomique.eoulsan.modules.generators that return types with arguments of type Requirement

Modifier and Type	Method	Description
Set<Requirement>	GenericStorageGeneratorModule.getRequirements()

Uses of Requirement in fr.ens.biologie.genomique.eoulsan.modules.multiqc

Methods in fr.ens.biologie.genomique.eoulsan.modules.multiqc that return types with arguments of type Requirement

Modifier and Type	Method	Description
Set<Requirement>	MultiQCModule.getRequirements()

Uses of Requirement in fr.ens.biologie.genomique.eoulsan.modules.singlecell

Methods in fr.ens.biologie.genomique.eoulsan.modules.singlecell that return types with arguments of type Requirement

Modifier and Type	Method	Description
Set<Requirement>	RSingleCellExperimentCreatorModule.getRequirements()

Uses of Requirement in fr.ens.biologie.genomique.eoulsan.requirements

Classes in fr.ens.biologie.genomique.eoulsan.requirements that implement Requirement

Modifier and Type	Class	Description
class	AbstractRequirement	This class define an abstract requirement.
class	DockerRequirement	This class define a Docker requirement.
class	PathRequirement	This class define a executable requirement.
class	RserveRequirement	This class define a Rserve server requirement.

Methods in fr.ens.biologie.genomique.eoulsan.requirements that return Requirement

Modifier and Type	Method	Description
static Requirement	DockerRequirement.newDockerRequirement(String dockerImage)	Create a new docker image as mandatory requirement.
static Requirement	DockerRequirement.newDockerRequirement(String dockerImage, boolean optional)	Create a new docker image requirement.
static Requirement	PathRequirement.newPathRequirement(String executableName)	Create a new mandatory executable requirement.
static Requirement	PathRequirement.newPathRequirement(String executableName, boolean optional)	Create a new executable requirement.
static Requirement	RserveRequirement.newRserveRequirement(String rserveServerName)	Create a new mandatory Rserve requirement.
static Requirement	RserveRequirement.newRserveRequirement(String rserveServerName, boolean optional)	Create a new Rserve requirement.