Package fr.ens.biologie.genomique.aozan.tests.pooledsample

Class PFPercentPooledSampleTest

java.lang.Object

fr.ens.biologie.genomique.aozan.tests.pooledsample.AbstractPooledSampleTest

fr.ens.biologie.genomique.aozan.tests.pooledsample.PFPercentPooledSampleTest

All Implemented Interfaces:

AozanTest, PooledSampleTest

public class PFPercentPooledSampleTest
extends AbstractPooledSampleTest

The class define test to compute the percent reads passing filter on all samples replica in run.

Since:

2.0

Author:

Sandrine Perrin

Constructor Summary

Constructors

Constructor	Description
PFPercentPooledSampleTest()	Public constructor.

Method Summary

Modifier and Type	Method	Description
List<AozanTest>	configure(TestConfiguration conf)	Configure the test.
List<String>	getCollectorsNamesRequiered()	Get the name of the collectors required for the test.
TestResult	test(RunData data, int pooledSampleId)	Do a test.

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.pooledsample.AbstractPooledSampleTest

getColumnName, getDescription, getName, getUnit, init

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

PFPercentPooledSampleTest

public PFPercentPooledSampleTest()

Public constructor.

Method Details

getCollectorsNamesRequiered

public List<String> getCollectorsNamesRequiered()

Description copied from interface: AozanTest

Get the name of the collectors required for the test.

Returns:

a list of String with the name of the required collectors

test

public TestResult test(RunData data,
 int pooledSampleId)

Description copied from interface: PooledSampleTest

Do a test.

Parameters:

data - result object

pooledSampleId - pooled sample Id

Returns:

a TestResult object with the result of the test

configure

public List<AozanTest> configure(TestConfiguration conf)
                          throws AozanException

Description copied from interface: AozanTest

Configure the test.

Parameters:

conf - the test configuration

Returns:

list of Aozan tests

Throws:

AozanException